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AT1G20950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Phosphofructokinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phosphofructokinase family protein; FUNCTIONS IN: diphosphate-fructose-6-phosphate 1-phosphotransferase activity; INVOLVED IN: response to fructose stimulus, response to sucrose stimulus, photosynthesis, response to glucose stimulus; LOCATED IN: pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase PfpB (InterPro:IPR011183), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: Phosphofructokinase family protein (TAIR:AT1G76550.1); Has 4397 Blast hits to 4316 proteins in 1453 species: Archae - 20; Bacteria - 3299; Metazoa - 3; Fungi - 0; Plants - 433; Viruses - 0; Other Eukaryotes - 642 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G20950-MONOMERBioGrid:23928eggNOG:COG0205eggNOG:KOG2440EMBL:AC007369EMBL:AY059855EMBL:BT008374
EMBL:CP002684EnsemblPlants:AT1G20950EnsemblPlants:AT1G20950.1entrez:838689Gene3D:1.10.10.480GeneID:838689Genevisible:Q9SYP2
GO:GO:0003872GO:GO:0005524GO:GO:0005829GO:GO:0009744GO:GO:0009749GO:GO:0009750GO:GO:0015979
GO:GO:0046835GO:GO:0046872GO:GO:0047334Gramene:AT1G20950.1gramene_pathway:2.7.1.90gramene_pathway:PWY-1042HAMAP:MF_01980
hmmpanther:PTHR13697hmmpanther:PTHR13697:SF1HOGENOM:HOG000017164InParanoid:Q9SYP2IntAct:Q9SYP2InterPro:IPR000023InterPro:IPR011183
InterPro:IPR013981iPTMnet:Q9SYP2KEGG:00010+2.7.1.11KEGG:00030+2.7.1.11KEGG:00051+2.7.1.11KEGG:00052+2.7.1.11KEGG:00680+2.7.1.11
KEGG:ath:AT1G20950KO:K00895OMA:MASVTEMPaxDb:Q9SYP2Pfam:PF00365Pfam:Q9SYP2PhylomeDB:Q9SYP2
PIR:D86342PIRSF:PIRSF005677PRIDE:Q9SYP2PRO:PR:Q9SYP2ProteinModelPortal:Q9SYP2Proteomes:UP000006548RefSeq:NP_173519.1
SMR:Q9SYP2STRING:3702.AT1G20950.1SUPFAM:SSF53784TAIR:AT1G20950TIGRfam:TIGR02477TIGRFAMs:TIGR02477UniGene:At.11197
UniGene:At.5362UniPathway:UPA00109UniProt:Q9SYP2
Coordinates (TAIR10) chr1:-:7297467..7301336
Molecular Weight (calculated) 67123.00 Da
IEP (calculated) 6.99
GRAVY (calculated) -0.08
Length 614 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSDFGIPRE LSPLQQLRSQ YKPELPPCLQ GTTVRVELGD GTTVAEAADS HTMARAFPHT LGQPLAHFLR ETAQVPDAHI ITELPSVRVG IVFCGRQAPG
101: GHNVIWGLFE ALKVHNAKST LLGFLGGSEG LFAQKTLEIT DDILQTYKNQ GGYDLLGRTK DQIKTTEQVN AALKACTDLK LDGLVIIGGV ISNTDAAHLA
201: EFFAAAKCST KVVGVPVTTN GDLKNQFVEA NVGFDTICKV NSQLISNACT DALSAEKYYY FIRLMGRKHS HVALECTLQS HPNMVILGEE VAASKLTIFD
301: IAKQICDAVQ ARAVEDKNHG VILIPEGLIV SIPEVYALLK EIHGLLRQGV SADKISTQLS PWSSALFEFL PPFIKKQLLL HPESDDSAQL SQIETEKLLA
401: YLVETEMNKR LKEGTYKGKK FNAICHFFGY QARGSLPSKF DCDYAYVLGH ICYHILAAGL NGYMATVTNL KSPVNKWKCG ATPITAMMTV KHWSQDASYT
501: LTSIGRPAIH PAMVDLKGKA YDLLRQNAQK FLMEDLYRNP GPLQYDGPGA DAKAVSLCVE DQDYMGRIKK LQEYLDQVRT IVKPGCSQDV LKAALSVMAS
601: VTDVLTTISS NGGQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)