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AT1G20930.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

7-day old Arabidopsis seedling (no marker)

RFP-At1g20930
(full-length)
overlay

SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cyclin-dependent kinase B2;2
Curator
Summary (TAIR10)
Cyclin-dependent kinase, expressed in flowers and suspension cell culture, expression peaks during M phase in synchronized cultures. Required for proper organization of the shoot apical meristem and for hormone signaling. Expressed in the shoot apical meristem. Involved in regulation of the G2/M transition of the mitotic cell cycle.
Computational
Description (TAIR10)
cyclin-dependent kinase B2;2 (CDKB2;2); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase B2;1 (TAIR:AT1G76540.1); Has 109034 Blast hits to 107606 proteins in 3051 species: Archae - 93; Bacteria - 11427; Metazoa - 41458; Fungi - 12141; Plants - 24398; Viruses - 437; Other Eukaryotes - 19080 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G20930-MONOMERBioGrid:23926EC:2.7.11.22EC:2.7.11.23eggNOG:ENOG410XPP3eggNOG:KOG0594EMBL:AC007369
EMBL:AK229456EMBL:AY084441EMBL:BT024780EMBL:CP002684EnsemblPlants:AT1G20930EnsemblPlants:AT1G20930.1entrez:838687
GeneID:838687Genevisible:Q8LG64GO:GO:0004674GO:GO:0004693GO:GO:0005524GO:GO:0007346GO:GO:0008353
GO:GO:0009755GO:GO:0009934GO:GO:0010389GO:GO:0046777Gramene:AT1G20930.1hmmpanther:PTHR24056hmmpanther:PTHR24056:SF178
HOGENOM:HOG000233024InParanoid:Q8LG64IntAct:Q8LG64InterPro:IPR000719InterPro:IPR008271InterPro:IPR011009InterPro:IPR017441
iPTMnet:Q8LG64KEGG:ath:AT1G20930KO:K07760OMA:AGQNIPQPaxDb:Q8LG64Pfam:PF00069Pfam:Q8LG64
Pfscan:PS50011PhylomeDB:Q8LG64PIR:B86342PRIDE:Q8LG64PRO:PR:Q8LG64PROSITE:PS00107PROSITE:PS00108
PROSITE:PS50011ProteinModelPortal:Q8LG64Proteomes:UP000006548RefSeq:NP_173517.1scanprosite:PS00107scanprosite:PS00108SMART:SM00220
SMR:Q8LG64STRING:3702.AT1G20930.1SUPFAM:SSF56112TAIR:AT1G20930tair10-symbols:CDKB2;2UniGene:At.20756UniGene:At.41679
UniProt:Q8LG64
Coordinates (TAIR10) chr1:-:7292752..7294664
Molecular Weight (calculated) 35848.90 Da
IEP (calculated) 9.01
GRAVY (calculated) -0.28
Length 315 amino acids
Sequence (TAIR10)
(BLAST)
001: MDNNGVKPAV SAMEAFEKLE KVGEGTYGKV YRAREKATGM IVALKKTRLH EDEEGVPPTT LREISILRML ARDPHIVRLM DVKQGINKEG KTVLYLVFEY
101: VDTDLKKFIR SFRQAGQNIP QNTVKCLMYQ LCKGMAFCHG HGVLHRDLKP HNLLMDRKTM TLKIADLGLA RAFTLPMKKY THEILTLWYR APEVLLGATH
201: YSTGVDMWSV GCIFAELVTK QAIFAGDSEL QQLLRIFRLL GTPNEEVWPG VSKLKDWHEY PQWKPLSLST AVPNLDEAGL DLLSKMLEYE PAKRISAKKA
301: MEHPYFDDLP DKSSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)