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AT1G20850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21109274 (2011): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : xylem cysteine peptidase 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
xylem cysteine peptidase 2 (XCP2); FUNCTIONS IN: cysteine-type peptidase activity, peptidase activity; INVOLVED IN: proteolysis, developmental programmed cell death; LOCATED IN: cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: xylem cysteine peptidase 1 (TAIR:AT4G35350.1); Has 7701 Blast hits to 7638 proteins in 709 species: Archae - 59; Bacteria - 219; Metazoa - 3282; Fungi - 4; Plants - 1889; Viruses - 133; Other Eukaryotes - 2115 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G20850-MONOMERBioGrid:23916EC:3.4.22.-eggNOG:COG4870
eggNOG:KOG1543EMBL:AC007369EMBL:AC069251EMBL:AF191028
EMBL:BT004822EMBL:CP002684EnsemblPlants:AT1G20850EnsemblPlants:AT1G20850.1
entrez:838677ExpressionAtlas:Q9LM66GeneID:838677Genevisible:Q9LM66
GO:GO:0004197GO:GO:0005615GO:GO:0005618GO:GO:0005764
GO:GO:0005886GO:GO:0010623GO:GO:0051603Gramene:AT1G20850.1
hmmpanther:PTHR12411hmmpanther:PTHR12411:SF353HOGENOM:HOG000230773InParanoid:Q9LM66
IntAct:Q9LM66InterPro:IPR000169InterPro:IPR000668InterPro:IPR013128
InterPro:IPR013201InterPro:IPR025660InterPro:IPR025661KEGG:ath:AT1G20850
KO:K16290MEROPS:C01.120OMA:LYKMASYPANTHER:PTHR12411
PaxDb:Q9LM66Pfam:PF00112Pfam:PF08246Pfam:Q9LM66
PhylomeDB:Q9LM66PIR:A86341PRIDE:Q9LM66PRINTS:PR00705
PRO:PR:Q9LM66PROSITE:PS00139PROSITE:PS00639PROSITE:PS00640
ProteinModelPortal:Q9LM66Proteomes:UP000006548RefSeq:NP_564126.1scanprosite:PS00139
scanprosite:PS00639scanprosite:PS00640SMART:SM00645SMART:SM00848
SMR:Q9LM66STRING:3702.AT1G20850.1SUPFAM:SSF54001TAIR:AT1G20850
tair10-symbols:XCP2UniGene:At.21316UniProt:Q0WT15UniProt:Q9LM66
Coordinates (TAIR10) chr1:+:7252208..7253537
Molecular Weight (calculated) 39709.50 Da
IEP (calculated) 4.93
GRAVY (calculated) -0.48
Length 356 amino acids
Sequence (TAIR10)
(BLAST)
001: MALSSPSRIL CFALALSAAS LSLSFASSHD YSIVGYSPED LESHDKLIEL FENWISNFEK AYETVEEKFL RFEVFKDNLK HIDETNKKGK SYWLGLNEFA
101: DLSHEEFKKM YLGLKTDIVR RDEERSYAEF AYRDVEAVPK SVDWRKKGAV AEVKNQGSCG SCWAFSTVAA VEGINKIVTG NLTTLSEQEL IDCDTTYNNG
201: CNGGLMDYAF EYIVKNGGLR KEEDYPYSME EGTCEMQKDE SETVTINGHQ DVPTNDEKSL LKALAHQPLS VAIDASGREF QFYSGGVFDG RCGVDLDHGV
301: AAVGYGSSKG SDYIIVKNSW GPKWGEKGYI RLKRNTGKPE GLCGINKMAS FPTKTK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)