suba logo
AT1G20816.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid envelope plastid outer membrane
  • PMID:20061580 (2010): plastid plastid envelope
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76405.2); Has 52 Blast hits to 52 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXGReggNOG:ENOG4111ZXCEMBL:AC069251EMBL:AK220825EMBL:BT014774EMBL:BT015010EMBL:CP002684
EnsemblPlants:AT1G20816EnsemblPlants:AT1G20816.1entrez:838673GeneID:838673Genevisible:Q6ID99GO:GO:0008308GO:GO:0015288
GO:GO:0031359GO:GO:0034426GO:GO:0044070GO:GO:0046930GO:GO:0055085GO:GO:1903959Gramene:AT1G20816.1
hmmpanther:PTHR35993HOGENOM:HOG000265001InParanoid:Q6ID99KEGG:ath:AT1G20816OMA:RIGYEMFPaxDb:Q6ID99Pfam:Q6ID99
PhylomeDB:Q6ID99PRIDE:Q6ID99PRO:PR:Q6ID99Proteomes:UP000006548RefSeq:NP_173505.2STRING:3702.AT1G20816.1TAIR:AT1G20816
UniGene:At.49899UniProt:Q6ID99
Coordinates (TAIR10) chr1:+:7233814..7234941
Molecular Weight (calculated) 19782.70 Da
IEP (calculated) 9.98
GRAVY (calculated) -0.66
Length 167 amino acids
Sequence (TAIR10)
(BLAST)
001: METSLRYATN SRSLKIHAKE KFPVNSKTRL QLHGELDTGA GVPSYFCAMI RYFFHEASTN LGVGLHYDKR EKLRCLVRGK KKFPVITDEV VTFNIKGRCD
101: FDQDLVQRNA KGAAEFDWNI WKFQKDQDLR LRIGYEMFEK VPYMQIRENN WTFNTNLKGK WNVRYDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)