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AT1G20800.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.987
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
F-box family protein
Computational
Description (TAIR10)
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G20795.1); Has 109 Blast hits to 52 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:CP002684EnsemblPlants:AT1G20800EnsemblPlants:AT1G20800.1entrez:838671
ExpressionAtlas:F4HUP4GeneID:838671Gramene:AT1G20800.1hmmpanther:PTHR32133
InterPro:IPR001810PaxDb:F4HUP4Pfscan:PS50181PRIDE:F4HUP4
PROSITE:PS50181ProteinModelPortal:F4HUP4Proteomes:UP000006548RefSeq:NP_173503.1
SUPFAM:SSF81383TAIR:AT1G20800UniGene:At.74535UniProt:F4HUP4
Coordinates (TAIR10) chr1:-:7228718..7231600
Molecular Weight (calculated) 56729.00 Da
IEP (calculated) 8.27
GRAVY (calculated) -0.37
Length 492 amino acids
Sequence (TAIR10)
(BLAST)
001: MDGLPFHILE EILFKLDPKS LAMMQCTDRS INSHISDDPY FKTVCKKDCN DDGVIHGYDF KATKWGVMGW IPRWYDGKRD LCQSKPSLTA SSSMELDEKE
101: DVDMMTMVND DDDDDKRVSS LSKVMRLISG ISPYAQSLFK KKGKILGKRL MIEEETESNM MMDEPNSSKF LDVERINKRR RVNPSVPLAD KKPVYFDGCI
201: HWLRKDGSIL AFNPETEQAR LIPIKFPLEL SAVANKFLFE ATEKELALIS ATEESINVYS LEDILIDPKW VLVKEIQNGV LHKKTMRCWN VAAYNGKCLV
301: LWQMNKVACD GDVFGYDLRA NKWEVIGWIP EWCDGYQVFY LFKPSFSSAI ELKQKVDVET MNMVHGDDCK YISTLRKLMS LIEEISPYAK RLFKKKGKRL
401: MTEEETKLKM TVDEPSSSKC LDVMRFSKKR RFLGMEKINK RKRTVRSAGR SGVVEGFLLY VVTAQYCRNT GEKLPISMVF YGSVFDNMHL LP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)