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AT1G20696.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:18433157 (2008): cytosol
  • PMID:18433157 (2008): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : high mobility group B3
Curator
Summary (TAIR10)
Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.
Computational
Description (TAIR10)
high mobility group B3 (HMGB3); FUNCTIONS IN: chromatin binding, structural constituent of chromatin, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: high mobility group B2 (TAIR:AT1G20693.2); Has 5914 Blast hits to 5088 proteins in 514 species: Archae - 0; Bacteria - 0; Metazoa - 4343; Fungi - 437; Plants - 569; Viruses - 4; Other Eukaryotes - 561 (source: NCBI BLink).
Protein Annotations
BioGrid:23898eggNOG:COG5648eggNOG:KOG0381EMBL:AC069251EMBL:AF411789EMBL:AY084848EMBL:AY097385
EMBL:AY136309EMBL:BT000420EMBL:CP002684EMBL:Y09482EMBL:Y14073EnsemblPlants:AT1G20696EnsemblPlants:AT1G20696.1
entrez:838659Gene3D:1.10.30.10GeneID:838659Genevisible:P93047GO:GO:0000785GO:GO:0003677GO:GO:0003682
GO:GO:0003700GO:GO:0005634GO:GO:0005829GO:GO:0006333GO:GO:0006355GO:GO:0030527hmmpanther:PTHR13711
hmmpanther:PTHR13711:SF223HOGENOM:HOG000197860InParanoid:P93047InterPro:IPR009071iPTMnet:P93047KEGG:ath:AT1G20696ncoils:Coil
PaxDb:P93047Pfam:P93047Pfam:PF00505Pfscan:PS50118PhylomeDB:P93047PIR:T51598PRIDE:P93047
PRO:PR:P93047PROSITE:PS50118ProteinModelPortal:P93047Proteomes:UP000006548RefSeq:NP_001031075.1RefSeq:NP_001077570.1RefSeq:NP_564124.1
SMART:SM00398SMR:P93047STRING:3702.AT1G20696.2SUPFAM:SSF47095TAIR:AT1G20696tair10-symbols:HMGB3tair10-symbols:NFD03
tair10-symbols:NFD3UniGene:At.27031UniProt:P93047
Coordinates (TAIR10) chr1:+:7179825..7181174
Molecular Weight (calculated) 15682.00 Da
IEP (calculated) 5.50
GRAVY (calculated) -1.42
Length 141 amino acids
Sequence (TAIR10)
(BLAST)
001: MKGAKSKAET RSTKLSVTKK PAKGAKGAAK DPNKPKRPSS AFFVFMEDFR VTYKEEHPKN KSVAAVGKAG GEKWKSLSDS EKAPYVAKAD KRKVEYEKNM
101: KAYNKKLEEG PKEDEESDKS VSEVNDEDDA EDGSEEEEDD D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)