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AT1G20693.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:18433157 (2008): cytosol
  • PMID:18433157 (2008): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : high mobility group B2
Curator
Summary (TAIR10)
Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.
Computational
Description (TAIR10)
high mobility group B2 (HMGB2); FUNCTIONS IN: chromatin binding, structural constituent of chromatin, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), High mobility group, HMG1/HMG2, subgroup (InterPro:IPR000135); BEST Arabidopsis thaliana protein match is: high mobility group B3 (TAIR:AT1G20696.3); Has 7209 Blast hits to 6316 proteins in 714 species: Archae - 2; Bacteria - 5; Metazoa - 5374; Fungi - 532; Plants - 604; Viruses - 9; Other Eukaryotes - 683 (source: NCBI BLink).
Protein Annotations
BioGrid:23897eggNOG:COG5648eggNOG:KOG0381EMBL:AB493468EMBL:AC069251EMBL:AF370248EMBL:AK118543
EMBL:AY063064EMBL:AY084731EMBL:CP002684EMBL:Y14072EnsemblPlants:AT1G20693EnsemblPlants:AT1G20693.1entrez:838658
Gene3D:1.10.30.10GeneID:838658Genevisible:O49596GO:GO:0000785GO:GO:0003677GO:GO:0003682GO:GO:0003700
GO:GO:0005634GO:GO:0005829GO:GO:0006333GO:GO:0006355GO:GO:0030527hmmpanther:PTHR13711hmmpanther:PTHR13711:SF223
HOGENOM:HOG000197860InParanoid:O49596InterPro:IPR009071iPTMnet:O49596KEGG:ath:AT1G20693ncoils:CoilOMA:DSIKREN
PaxDb:O49596Pfam:O49596Pfam:PF00505Pfscan:PS50118PhylomeDB:O49596PIR:F86339PIR:T51597
PRIDE:O49596PRO:PR:O49596PROSITE:PS50118ProteinModelPortal:O49596Proteomes:UP000006548RefSeq:NP_001031074.1RefSeq:NP_001077569.1
RefSeq:NP_564123.1SMART:SM00398SMR:O49596STRING:3702.AT1G20693.1SUPFAM:SSF47095TAIR:AT1G20693tair10-symbols:HMG BETA 1
tair10-symbols:HMGB2tair10-symbols:NFD02tair10-symbols:NFD2UniGene:At.21298UniProt:O49596
Coordinates (TAIR10) chr1:+:7177282..7178487
Molecular Weight (calculated) 15982.30 Da
IEP (calculated) 7.00
GRAVY (calculated) -1.43
Length 144 amino acids
Sequence (TAIR10)
(BLAST)
001: MKGAKSKTET RSSKLSVTKK PAKGAGRGKA AAKDPNKPKR PASAFFVFME DFRETFKKEN PKNKSVATVG KAAGDKWKSL SDSEKAPYVA KAEKRKVEYE
101: KNIKAYNKKL EEGPKEDEES DKSVSEVNDE DDAEDGSEEE EDDD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)