suba logo
AT1G20690.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.970
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : SWI-SNF-related chromatin binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SWI-SNF-related chromatin binding protein; BEST Arabidopsis thaliana protein match is: SWI-SNF-related chromatin binding protein (TAIR:AT1G20240.1); Has 53 Blast hits to 49 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:CP002684EnsemblPlants:AT1G20690EnsemblPlants:AT1G20690.1entrez:838657
GeneID:838657Gramene:AT1G20690.1KEGG:ath:AT1G20690PaxDb:F4HUM5
ProteinModelPortal:F4HUM5Proteomes:UP000006548RefSeq:NP_564122.1TAIR:AT1G20690
UniGene:At.41696UniProt:F4HUM5
Coordinates (TAIR10) chr1:+:7175086..7175808
Molecular Weight (calculated) 27701.20 Da
IEP (calculated) 5.96
GRAVY (calculated) -0.24
Length 240 amino acids
Sequence (TAIR10)
(BLAST)
001: METKYRFEIS DGDSWRLSKT TLTTSSKSGL KKRMKPVYVD GNLHWLRNDW SIIAFNPETE QARLIPCSFH PTPDTKVLFA ANDETNLLTL ISGTKKAISV
101: YTLLGYHKWT LASQFKNVSM EESDLECWNV VAYDGKCLVV REKMIRSSDI ELHVYDMEAD SWGVFETAKC WSQDFYKFKP SFFSIEDDEQ TKVLVPSDDQ
201: RLSYLTTIME MIQPGKLSHC LIILSQFIIL NHPTPLLISF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)