AT1G20670.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA-binding bromodomain-containing protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNA-binding bromodomain-containing protein; CONTAINS InterPro DOMAIN/s: Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G76380.2); Has 11096 Blast hits to 8233 proteins in 323 species: Archae - 0; Bacteria - 121; Metazoa - 4363; Fungi - 1457; Plants - 677; Viruses - 7; Other Eukaryotes - 4471 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:7164537..7167933 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72959.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.86 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.07 | ||||||||||||||||||||||||||||||||||||||||
| Length | 652 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGEVADTMTK KKKKGRPSLL DLQKRAIKQQ QQQLQQQQQQ HKNNHQDDDD HHHNNNNRSG SKNPNSLNHR SKRRNPNSND GDSPWIKDEG EDNDDDERRE 101: KKHKLLHGLN SHSHRHSPNS QSDLNLDQTP EPSFNRRNLS AAASGSDYHT GEKASKATDI LQGSPVESGP TTPLPDKKLL LFILDRLQKK DTYGVYSDPV 201: DPEELPDYFE IIKNPMDFST LRNKLDSGAY STLEQFERDV FLICTNAMEY NSADTVYYRQ ARAIQELAKK DFENLRQDSD DEEPQSQQQQ QQQPKVARRG 301: RPPKKHPEPS SIDRTASEIS ADALIPGDSS NKFSGAYNLR KAPPSYKFRQ AESSVRINHN SETQSGWSVD WESEFPSSVV KAVNKYGMKH FNVDDNRRDT 401: YNHLSTSTQE PSVLTTLEDE LKQLIPVGLN MEYGYAKSLA RYAANLGPVA WKIASRRIET VLPSGIKFGQ GWVGENPAGP EEDDSQKQNI LMSSGKQKCS 501: NDLASDDHSN RILSPTASVS SAFIGNRHAS SQAIEETTPP PARVLNPEID HPSSSSHQAG LLIKTESSNG LIRGFNHNAN QMLGIARQQQ PNVSNEATPV 601: SQQQGSLFPY PKQEFHRFPP DLNARLVSPN SPGSNQQTGS SSSQHPDLAL QL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)