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AT1G20500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : AMP-dependent synthetase and ligase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, metabolic process; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT5G38120.1); Has 82776 Blast hits to 75503 proteins in 3739 species: Archae - 1179; Bacteria - 53477; Metazoa - 3434; Fungi - 4583; Plants - 2754; Viruses - 1; Other Eukaryotes - 17348 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G20500-MONOMEREC:6.2.1.-eggNOG:COG0318eggNOG:KOG1176
EMBL:AC027665EMBL:CP002684EnsemblPlants:AT1G20500EnsemblPlants:AT1G20500.1
entrez:838638GeneID:838638Genevisible:P0C5B6GO:GO:0005524
GO:GO:0005777GO:GO:0016874Gramene:AT1G20500.1HOGENOM:HOG000230009
InParanoid:P0C5B6InterPro:IPR000873InterPro:IPR020845InterPro:IPR025110
KEGG:ath:AT1G20500OMA:TYRDWIGPaxDb:P0C5B6Pfam:P0C5B6
Pfam:PF00501Pfam:PF13193PhylomeDB:P0C5B6PIR:D86338
PRIDE:P0C5B6PRO:PR:P0C5B6PROSITE:PS00455ProteinModelPortal:P0C5B6
Proteomes:UP000006548Reactome:R-ATH-75105RefSeq:NP_173474.5SABIO-RK:P0C5B6
scanprosite:PS00455SMR:P0C5B6STRING:3702.AT1G20500.1SUPFAM:SSF56801
TAIR:AT1G20500TMHMM:TMhelixUniGene:At.43932UniProt:P0C5B6
Coordinates (TAIR10) chr1:-:7100502..7102847
Molecular Weight (calculated) 60524.00 Da
IEP (calculated) 8.43
GRAVY (calculated) -0.08
Length 550 amino acids
Sequence (TAIR10)
(BLAST)
001: MAYPERSLIV DPRSGFCKSN STFYSKRQPL SLPPNLSRDV TTFISSQPHR GKTAFIDAAT GQCLTFSDLW RAVDRVADCL YHEVGIRRGD VVLILSPNSI
101: FIPVVCLSVM SLGAVFTTAN TLNTSGEISK QIADSNPTLV FTTRQLAPKL PVAISVVLTD DEVYQELTSA IRVVGILSEM VKKEPSGQRV RDRVNQDDTA
201: MMLYSSGTTG PSKGVISSHR NLTAHVARFI SDNLKRDDIF ICTVPMFHTY GLLTFAMGTV ALGSTVVILR RFQLHDMMDA VEKHRATALA LAPPVLVAMI
301: NDADLIKAKY DLSSLKTVRC GGAPLSKEVT EGFLEKYPTV DILQGYALTE SNGGGAFTNS AEESRRYGTA GTLTSDVEAR IVDPNTGRFM GINQTGELWL
401: KGPSISKGYF KNQEATNETI NLEGWLKTGD LCYIDEDGFL FVVDRLKELI KYKGYQVPPA ELEALLITHP DILDAAVIPF PDKEAGQYPM AYVVRKHESN
501: LSEKQVIDFI SKQVAPYKKI RKVSFINSIP KTASGKTLRK DLIKLATSKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)