suba logo
AT1G20450.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 0.500
cytosol 0.500
ASURE: cytosol,plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:20061580 (2010): plastid
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Dehydrin family protein
Curator
Summary (TAIR10)
Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm.
Computational
Description (TAIR10)
EARLY RESPONSIVE TO DEHYDRATION 10 (ERD10); CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: cold-regulated 47 (TAIR:AT1G20440.1); Has 8140 Blast hits to 5021 proteins in 461 species: Archae - 16; Bacteria - 327; Metazoa - 2363; Fungi - 375; Plants - 2004; Viruses - 65; Other Eukaryotes - 2990 (source: NCBI BLink).
Protein Annotations
BioGrid:23872DisProt:DP00606eggNOG:ENOG410J2D2eggNOG:ENOG410ZBHPEMBL:AC027665EMBL:AF083731EMBL:AF360351
EMBL:AY048208EMBL:AY136407EMBL:AY142491EMBL:BT002131EMBL:CP002684EMBL:D17714EMBL:X77614
EMBL:X90958EnsemblPlants:AT1G20450EnsemblPlants:AT1G20450.1entrez:838633ExpressionAtlas:P42759GeneID:838633Genevisible:P42759
GO:GO:0003779GO:GO:0005634GO:GO:0005737GO:GO:0005829GO:GO:0009409GO:GO:0009414GO:GO:0009506
GO:GO:0009631GO:GO:0009737GO:GO:0010029GO:GO:0016020hmmpanther:PTHR33346hmmpanther:PTHR33346:SF2HOGENOM:HOG000239337
InParanoid:P42759IntAct:P42759InterPro:IPR000167InterPro:IPR030513iPTMnet:P42759ncoils:CoilOMA:LPGHSKK
PaxDb:P42759Pfam:P42759Pfam:PF00257PhylomeDB:P42759PIR:S60480PRIDE:P42759PRO:PR:P42759
PROSITE:PS00315PROSITE:PS00823ProteinModelPortal:P42759Proteomes:UP000006548RefSeq:NP_850947.1scanprosite:PS00315scanprosite:PS00823
STRING:3702.AT1G20450.1TAIR:AT1G20450tair10-symbols:ERD10tair10-symbols:LTI29tair10-symbols:LTI45UniGene:At.24491UniGene:At.67298
UniProt:P42759
Coordinates (TAIR10) chr1:-:7088235..7089107
Molecular Weight (calculated) 29549.30 Da
IEP (calculated) 4.85
GRAVY (calculated) -1.35
Length 260 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEEYKNTVP EQETPKVATE ESSAPEIKER GMFDFLKKKE EVKPQETTTL ASEFEHKTQI SEPESFVAKH EEEEHKPTLL EQLHQKHEEE EENKPSLLDK
101: LHRSNSSSSS SSDEEGEDGE KKKKEKKKKI VEGDHVKTVE EENQGVMDRI KEKFPLGEKP GGDDVPVVTT MPAPHSVEDH KPEEEEKKGF MDKIKEKLPG
201: HSKKPEDSQV VNTTPLVETA TPIADIPEEK KGFMDKIKEK LPGYHAKTTG EEEKKEKVSD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)