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AT1G20440.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.972
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cold-regulated 47
Curator
Summary (TAIR10)
Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. Cold regulated gene, amino acid sequence homology with Group II LEA (late embryogenesis abundant) proteins. Also responds to osmotic stress, ABA, dehydration and inhibits e.coli growth while overexpressed. COR47 and RAB18 double overexpressor plants are cold tolerant.
Computational
Description (TAIR10)
cold-regulated 47 (COR47); CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: Dehydrin family protein (TAIR:AT1G20450.1); Has 14264 Blast hits to 8754 proteins in 735 species: Archae - 48; Bacteria - 976; Metazoa - 4799; Fungi - 1094; Plants - 2502; Viruses - 117; Other Eukaryotes - 4728 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J2D2eggNOG:ENOG410ZBHPEMBL:AK230360EMBL:X59814EnsemblPlants:AT1G20440EnsemblPlants:AT1G20440.1entrez:838632
ExpressionAtlas:Q0WL48GeneID:838632GO:GO:0006950GO:GO:0006970GO:GO:0009409GO:GO:0009415Gramene:AT1G20440.1
hmmpanther:PTHR33346hmmpanther:PTHR33346:SF2InterPro:IPR000167InterPro:IPR030513KEGG:ath:AT1G20440ncoils:CoilOMA:KNNVPEH
PaxDb:Q0WL48Pfam:P31168Pfam:PF00257PhylomeDB:Q0WL48PRIDE:Q0WL48PROSITE:PS00315PROSITE:PS00823
ProteinModelPortal:Q0WL48RefSeq:NP_173468.1scanprosite:PS00315scanprosite:PS00823STRING:3702.AT1G20440.1TAIR:AT1G20440tair10-symbols:AtCOR47
tair10-symbols:COR47tair10-symbols:RD17UniGene:At.22974UniGene:At.25555UniGene:At.26974UniProt:P31168UniProt:Q0WL48
Coordinates (TAIR10) chr1:-:7084722..7085664
Molecular Weight (calculated) 29898.30 Da
IEP (calculated) 4.44
GRAVY (calculated) -1.25
Length 265 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEEYKNNVP EHETPTVATE ESPATTTEVT DRGLFDFLGK KEEEVKPQET TTLESEFDHK AQISEPELAA EHEEVKENKI TLLEELQEKT EEDEENKPSV
101: IEKLHRSNSS SSSSSDEEGE EKKEKKKKIV EGEEDKKGLV EKIKEKLPGH HDKTAEDDVP VSTTIPVPVS ESVVEHDHPE EEKKGLVEKI KEKLPGHHDE
201: KAEDSPAVTS TPLVVTEHPV EPTTELPVEH PEEKKGILEK IKEKLPGYHA KTTEEEVKKE KESDD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)