AT1G20370.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.960 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pseudouridine synthase family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase I, TruA, N-terminal (InterPro:IPR020094), Pseudouridine synthase I, TruA, alpha/beta domain (InterPro:IPR020097), Pseudouridine synthase I, TruA, C-terminal (InterPro:IPR020095), Pseudouridine synthase I, TruA (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT1G76120.1); Has 3883 Blast hits to 3550 proteins in 1359 species: Archae - 140; Bacteria - 2302; Metazoa - 346; Fungi - 312; Plants - 197; Viruses - 0; Other Eukaryotes - 586 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:7051846..7053588 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61553.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.98 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.60 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 549 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MENQEPDIEK LPRDDVPDRE PDHKKLKIST TGQETDSSAV TTGGSNVAER RAPKYRRRKV AIVFAFCGVG YQGMQKNPGA KTIEGELEEA LFHAGAVPDA 101: DRNKPRNYEW ARSARTDKGV SAVGQVVSGR FYVDPPGFVE RLNSKLPDQI RVFGYKRVAP SFSSKKFCDR RRYVYLIPVF ALDPCVHGEA EMVRTDLGYE 201: YVKCVECSEK GYKIPLGVMG KDTDCCDTKS LEIQSDISSS TCDAIGADVK CETLSSSVPS AENNLNSEVL DGADVSALSS KAEGMEESNT LAKVEMNNGE 301: GEDMTKSESK FCYGEKEKER FNRILSYYVG SHNFHNFTTR TKAADPAANR YILSFNANTV INLDGKDFVK CEVVGQSFML HQIRKMIGLA VAIMRNYAPE 401: SLIEASFKKD VRINVPMAPE VGLYLDECFF TSYNKRFKGS HEEVSMEEYK EVAEEFKWKY VYSHIGSAEE KDGAVAIWLH SLNQRNYPDL RSNEYQPDEV 501: IVYKKIGEAS EENIHEGNAE LFVVDKVNDE TSEGTTMEER TTLEEKATG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)