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AT1G20340.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cupredoxin superfamily protein
Curator
Summary (TAIR10)
recombination and DNA-damage resistance protein (DRT112) One of two Arabidopsis plastocyanin genes. Predominant form, expressed 10x higher than PETE1. PETE2 is thought to be post-transcriptionally regulated via copper accumulation and is involved in copper homeostasis.
Computational
Description (TAIR10)
DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112 (DRT112); FUNCTIONS IN: electron carrier activity, copper ion binding; INVOLVED IN: response to UV, response to chemical stimulus, copper ion homeostasis, negative regulation of translation, response to copper ion; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Blue (type 1) copper protein (InterPro:IPR001235), Cupredoxin (InterPro:IPR008972), Plastocyanin (InterPro:IPR002387), Blue (type 1) copper domain (InterPro:IPR000923); BEST Arabidopsis thaliana protein match is: plastocyanin 1 (TAIR:AT1G76100.1); Has 1286 Blast hits to 1278 proteins in 235 species: Archae - 146; Bacteria - 416; Metazoa - 0; Fungi - 2; Plants - 206; Viruses - 5; Other Eukaryotes - 511 (source: NCBI BLink).
Protein Annotations
BioGrid:23861eggNOG:COG3794eggNOG:ENOG410IY43EMBL:AC026234EMBL:AF324702EMBL:AF326879EMBL:AF334383
EMBL:AF361853EMBL:AJ271355EMBL:AY086284EMBL:AY374308EMBL:BT001030EMBL:CP002684EMBL:M98456
EnsemblPlants:AT1G20340EnsemblPlants:AT1G20340.1entrez:838622Gene3D:2.60.40.420GeneID:838622Genevisible:P42699GO:GO:0005507
GO:GO:0009507GO:GO:0009534GO:GO:0009535GO:GO:0009570GO:GO:0009579GO:GO:0017148GO:GO:0031977
GO:GO:0046028GO:GO:0046688GO:GO:0055035GO:GO:0055070GO:GO:0055114Gramene:AT1G20340.1HOGENOM:HOG000209447
InParanoid:P42699InterPro:IPR000923InterPro:IPR001235InterPro:IPR002387InterPro:IPR008972InterPro:IPR028871KEGG:ath:AT1G20340
KO:K02638OMA:MLASNAMPaxDb:P42699Pfam:P42699Pfam:PF00127PhylomeDB:P42699PIR:B86337
PIR:PA0004PIR:S33707PRIDE:P42699PRINTS:PR00156PRINTS:PR00157PRO:PR:P42699PROSITE:PS00196
ProteinModelPortal:P42699Proteomes:UP000006548RefSeq:NP_173459.1scanprosite:PS00196SMR:P42699STRING:3702.AT1G20340.1SUPFAM:SSF49503
TAIR:AT1G20340tair10-symbols:DRT112tair10-symbols:PETE2TIGRfam:TIGR02656TIGRFAMs:TIGR02656TMHMM:TMhelixUniGene:At.24399
UniGene:At.71481UniGene:At.71708UniGene:At.72031UniProt:P42699
Coordinates (TAIR10) chr1:-:7042770..7043273
Molecular Weight (calculated) 16985.20 Da
IEP (calculated) 4.83
GRAVY (calculated) 0.28
Length 167 amino acids
Sequence (TAIR10)
(BLAST)
001: MASVTSATVA IPSFTGLKAS TIKSSATVRI QTAAVASPKL TVKSSLKNFG VAAVAAAASI ALAGNAMAIE VLLGGGDGSL AFIPNDFSIA KGEKIVFKNN
101: AGYPHNVVFD EDEIPSGVDV AKISMDEQDL LNGAGETYEV ALTEPGTYSF YCAPHQGAGM VGKVTVN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)