suba logo
AT1G20260.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
vacuole 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27122571 (2016): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22430844 (2012): Golgi
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : ATPase, V1 complex, subunit B protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATPase, V1 complex, subunit B protein; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, ATP binding, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: proton transport, ATP metabolic process, ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, chloroplast, vacuole; EXPRESSED IN: cotyledon, male gametophyte, guard cell, cultured cell; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: ATPase, alpha/beta subunit, nucleotide-binding domain, active site (InterPro:IPR020003), ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, alpha/beta subunit, nucleotide-binding domain (InterPro:IPR000194), ATPase, V1 complex, subunit B (InterPro:IPR005723); BEST Arabidopsis thaliana protein match is: ATPase, V1 complex, subunit B protein (TAIR:AT1G76030.1); Has 40448 Blast hits to 39328 proteins in 9688 species: Archae - 965; Bacteria - 20989; Metazoa - 1674; Fungi - 795; Plants - 8187; Viruses - 0; Other Eukaryotes - 7838 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G20260-MONOMERBioGrid:23853eggNOG:COG1156eggNOG:KOG1351EMBL:AC026234EMBL:AK176408EMBL:AK176641
EMBL:AK176750EMBL:AK176915EMBL:AY062616EMBL:BT000150EMBL:CP002684EnsemblPlants:AT1G20260EnsemblPlants:AT1G20260.1
entrez:838614Gene3D:3.40.50.300GeneID:838614Genevisible:Q8W4E2GO:GO:0005524GO:GO:0005773GO:GO:0005774
GO:GO:0005794GO:GO:0009507GO:GO:0015991GO:GO:0016820GO:GO:0030835GO:GO:0033180GO:GO:0046034
GO:GO:0051015GO:GO:0051017GO:GO:0051693Gramene:AT1G20260.1HAMAP:MF_00310hmmpanther:PTHR15184hmmpanther:PTHR15184:SF53
HOGENOM:HOG000165320InParanoid:Q8W4E2IntAct:Q8W4E2InterPro:IPR000194InterPro:IPR004100InterPro:IPR005723InterPro:IPR020003
InterPro:IPR022879InterPro:IPR027417iPTMnet:Q8W4E2KEGG:00190+3.6.3.14KEGG:ath:AT1G20260KO:K02147OMA:DRPHEQT
PaxDb:Q8W4E2Pfam:PF00006Pfam:PF00306Pfam:PF02874Pfam:Q8W4E2PhylomeDB:Q8W4E2PIR:C86336
PIRSF:PIRSF039114PRIDE:Q8W4E2PRO:PR:Q8W4E2PROSITE:PS00152ProteinModelPortal:Q8W4E2Proteomes:UP000006548Reactome:R-ATH-77387
Reactome:R-ATH-917977RefSeq:NP_173451.5scanprosite:PS00152SMR:Q8W4E2STRING:3702.AT1G20260.1SUPFAM:SSF52540TAIR:AT1G20260
TCDB:3.A.2.2.5TIGRfam:TIGR01040TIGRFAMs:TIGR01040UniGene:At.24526UniProt:Q8W4E2
Coordinates (TAIR10) chr1:+:7016971..7020290
Molecular Weight (calculated) 54315.00 Da
IEP (calculated) 4.73
GRAVY (calculated) -0.25
Length 487 amino acids
Sequence (TAIR10)
(BLAST)
001: MVETSIDMEE GTLEIGMEYR TVSGVAGPLV ILDKVKGPKY QEIVNIRLGD GSTRRGQVLE VDGEKAVVQV FEGTSGIDNK FTTVQFTGEV LKTPVSLDML
101: GRIFNGSGKP IDNGPPILPE AYLDISGSSI NPSERTYPEE MIQTGISTID VMNSIARGQK IPLFSAAGLP HNEIAAQICR QAGLVKRLEK TENLIQEDHG
201: EDNFAIVFAA MGVNMETAQF FKRDFEENGS MERVTLFLNL ANDPTIERII TPRIALTTAE YLAYECGKHV LVILTDMSSY ADALREVSAA REEVPGRRGY
301: PGYMYTDLAT IYERAGRIEG RKGSITQIPI LTMPNDDITH PTPDLTGYIT EGQIYIDRQL HNRQIYPPIN VLPSLSRLMK SAIGEGMTRK DHSDVSNQLY
401: ANYAIGKDVQ AMKAVVGEEA LSSEDLLYLE FLDKFERKFV MQGAYDTRNI FQSLDLAWTL LRIFPRELLH RIPAKTLDQF YSRDSTS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)