AT1G20230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G23330.1); Has 43615 Blast hits to 14351 proteins in 266 species: Archae - 0; Bacteria - 17; Metazoa - 112; Fungi - 108; Plants - 42635; Viruses - 0; Other Eukaryotes - 743 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:7009570..7011852 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 84869.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.21 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.02 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 760 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTKQVLPLIE KIPQSIVGFL ESSSYHWSSS LSKTTQAHAR ILKSGAQNDG YISAKLIASY SNYNCFNDAD LVLQSIPDPT IYSFSSLIYA LTKAKLFTQS 101: IGVFSRMFSH GLIPDSHVLP NLFKVCAELS AFKVGKQIHC VSCVSGLDMD AFVQGSMFHM YMRCGRMGDA RKVFDRMSDK DVVTCSALLC AYARKGCLEE 201: VVRILSEMES SGIEANIVSW NGILSGFNRS GYHKEAVVMF QKIHHLGFCP DQVTVSSVLP SVGDSEMLNM GRLIHGYVIK QGLLKDKCVI SAMIDMYGKS 301: GHVYGIISLF NQFEMMEAGV CNAYITGLSR NGLVDKALEM FELFKEQTME LNVVSWTSII AGCAQNGKDI EALELFREMQ VAGVKPNHVT IPSMLPACGN 401: IAALGHGRST HGFAVRVHLL DNVHVGSALI DMYAKCGRIN LSQIVFNMMP TKNLVCWNSL MNGFSMHGKA KEVMSIFESL MRTRLKPDFI SFTSLLSACG 501: QVGLTDEGWK YFKMMSEEYG IKPRLEHYSC MVNLLGRAGK LQEAYDLIKE MPFEPDSCVW GALLNSCRLQ NNVDLAEIAA EKLFHLEPEN PGTYVLLSNI 601: YAAKGMWTEV DSIRNKMESL GLKKNPGCSW IQVKNRVYTL LAGDKSHPQI DQITEKMDEI SKEMRKSGHR PNLDFALHDV EEQEQEQMLW GHSEKLAVVF 701: GLLNTPDGTP LQVIKNLRIC GDCHAVIKFI SSYAGREIFI RDTNRFHHFK DGICSCGDFW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)