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AT1G20190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:21109274 (2011): extracellular region
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : expansin 11
Curator
Summary (TAIR10)
member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
Computational
Description (TAIR10)
expansin 11 (EXPA11); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.4); Has 2193 Blast hits to 2189 proteins in 161 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 64; Plants - 2080; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGT8eggNOG:ENOG410YB3REMBL:AC022472EMBL:AF332436EMBL:CP002684EnsemblPlants:AT1G20190EnsemblPlants:AT1G20190.1
entrez:838608Gene3D:2.40.40.10Gene3D:2.60.40.760GeneID:838608Genevisible:Q9LNU3GO:GO:0005576GO:GO:0005618
GO:GO:0009664GO:GO:0016020Gramene:AT1G20190.1hmmpanther:PTHR31867hmmpanther:PTHR31867:SF4HOGENOM:HOG000220793InParanoid:Q9LNU3
InterPro:IPR002963InterPro:IPR007112InterPro:IPR007117InterPro:IPR007118InterPro:IPR009009KEGG:ath:AT1G20190OMA:ADPRFCI
PaxDb:Q9LNU3Pfam:PF01357Pfam:PF03330Pfam:Q9LNU3Pfscan:PS50842Pfscan:PS50843PhylomeDB:Q9LNU3
PIR:F86335PRIDE:Q9LNU3PRINTS:PR01225PRINTS:PR01226PRO:PR:Q9LNU3PROSITE:PS50842PROSITE:PS50843
ProteinModelPortal:Q9LNU3Proteomes:UP000006548RefSeq:NP_173446.1SMART:SM00837SMR:Q9LNU3STRING:3702.AT1G20190.1SUPFAM:SSF49590
SUPFAM:SSF50685TAIR:AT1G20190tair10-symbols:ATEXP11tair10-symbols:ATEXPA11tair10-symbols:ATHEXP ALPHA 1.14tair10-symbols:EXP11tair10-symbols:EXPA11
UniGene:At.20255UniProt:Q9LNU3
Coordinates (TAIR10) chr1:-:6998762..6999710
Molecular Weight (calculated) 26762.70 Da
IEP (calculated) 8.72
GRAVY (calculated) 0.03
Length 252 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKSLAGLAV LAALFIAVDA FRPSGLTNGH ATFYGGSDAS GTMGGACGYG DLYSAGYGTM TAALSTALFN DGASCGECYR ITCDHAADSR WCLKGASVVI
101: TATNFCPPNF ALPNNNGGWC NPPLKHFDMA QPAWEKIGIY RGGIVPVVFQ RVSCYKKGGV RFRINGRDYF ELVNIQNVGG AGSIKSVSIK GSKTGWLAMS
201: RNWGANWQSN AYLDGQALSF SITTTDGATR VFLNVVPSSW SFGQIYSSNV QF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)