AT1G20180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.799 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF677) | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF677); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT3G49070.1); Has 186 Blast hits to 186 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 186; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:6996354..6997779 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44076.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.68 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||
| Length | 390 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLKVKNFLGS RLKSFPTRKG KSDKECCRSL TSKLSVNEEY KEAFRTNSYL ETRTKAEDQL GITSCSKLSS SSPSPSSSSD LSFHSHFTDY LLDPPQETLD 101: ALMQDSSLDN LIVTFFDLSS EACDVCETLL QCLQQIKINH NKIKRVMKIG KRVCNGAKTL ECSPEMLCAL IFQELSRFAA LKNPLCRIVN EAQFRIVHDA 201: NSDLLTKLTS KKRRIRRKIR FFKFCKKLGG YSLVITHSAI VITLLIIALH SILGVFAAPA LLGLCSFCLL RKKKAKGRMH KSNKDTTLEK LGTQIDIAAK 301: GMFILINDLD TLSRLAGRLC DEIEHRKTVA AMCAKSRKIE VLKEALREFN GHEEKFSDQL QELEEHLYLC FHTINRSRRL VLAQITGQSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)