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AT1G20110.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.938
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:14581625 (2003): peroxisome
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/FYVE/PHD zinc finger superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT3G14270.1); Has 29282 Blast hits to 20083 proteins in 828 species: Archae - 11; Bacteria - 1932; Metazoa - 10999; Fungi - 6486; Plants - 4104; Viruses - 590; Other Eukaryotes - 5160 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IUB4eggNOG:ENOG410Y0W8EMBL:AC022472EMBL:AF367315EMBL:AF428277EMBL:AK221672EMBL:AY054543
EMBL:AY143942EMBL:CP002684EnsemblPlants:AT1G20110EnsemblPlants:AT1G20110.1entrez:838600Gene3D:3.30.40.10GeneID:838600
Genevisible:Q9ASS2GO:GO:0000813GO:GO:0005634GO:GO:0015031GO:GO:0031902GO:GO:0036258GO:GO:0043130
GO:GO:0046872GO:GO:0055072GO:GO:0070676Gramene:AT1G20110.1hmmpanther:PTHR22835hmmpanther:PTHR22835:SF196HOGENOM:HOG000242392
IntAct:Q9ASS2InterPro:IPR000306InterPro:IPR011011InterPro:IPR013083InterPro:IPR017455iPTMnet:Q9ASS2KEGG:ath:AT1G20110
ncoils:CoilOMA:TRNTYASPaxDb:Q9ASS2Pfam:PF01363Pfscan:PS50178PhylomeDB:Q9ASS2PRIDE:Q940J6
PROSITE:PS50178ProteinModelPortal:Q9ASS2Proteomes:UP000006548RefSeq:NP_564103.1SMART:SM00064SMR:Q9ASS2STRING:3702.AT1G20110.1
SUPFAM:SSF57903TAIR:AT1G20110UniGene:At.15444UniProt:Q9ASS2
Coordinates (TAIR10) chr1:+:6971554..6974578
Molecular Weight (calculated) 65399.10 Da
IEP (calculated) 6.77
GRAVY (calculated) -0.79
Length 601 amino acids
Sequence (TAIR10)
(BLAST)
001: MQQGDYNSYY HHQYSQFQNP TPNPNPNPNP SPPAPATVAG PTDLTRNTYA SAPPFTGGYG SADYSNYSQN YTPYGQNSEH VPPSAPSFTS PSQPPPSPPA
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)