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AT1G20090.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.500
cytosol 0.500
ASURE: cytosol,plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RHO-related protein from plants 2
Curator
Summary (TAIR10)
Member of the Rho GTPase family. Functions to organize the microtubular cytoskeleton in combination with RIC1 and RIC4. These interactions affect pavement cell morphogenesis and pollen tube growth. ROP2 expression is stimulated by brassinosteroid treatment. Inhibit light-induced stomatal opening.
Computational
Description (TAIR10)
RHO-related protein from plants 2 (ROP2); CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Ras small GTPase, Ras type (InterPro:IPR003577), Small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: RAC-like GTP binding protein 5 (TAIR:AT1G75840.1); Has 24645 Blast hits to 24619 proteins in 682 species: Archae - 9; Bacteria - 67; Metazoa - 12700; Fungi - 3846; Plants - 2697; Viruses - 20; Other Eukaryotes - 5306 (source: NCBI BLink).
Protein Annotations
BioGrid:23837DIP:DIP-29818NeggNOG:COG1100eggNOG:KOG0393EMBL:AC022472EMBL:AF115471EMBL:AF332438
EMBL:AF360154EMBL:AY056308EMBL:CP002684EMBL:U45236EMBL:U49972EnsemblPlants:AT1G20090EnsemblPlants:AT1G20090.1
entrez:838598ExpressionAtlas:Q38919Gene3D:3.40.50.300GeneID:838598Genevisible:Q38919GO:GO:0000226GO:GO:0000902
GO:GO:0005525GO:GO:0005622GO:GO:0005634GO:GO:0005730GO:GO:0005737GO:GO:0005886GO:GO:0007264
GO:GO:0009416GO:GO:0009860GO:GO:0010119Gramene:AT1G20090.1hmmpanther:PTHR24072hmmpanther:PTHR24072:SF171HOGENOM:HOG000233974
InParanoid:Q38919IntAct:Q38919InterPro:IPR001806InterPro:IPR005225InterPro:IPR027417KEGG:ath:AT1G20090KO:K04392
OMA:FERNCKKPaxDb:Q38919Pfam:PF00071Pfam:Q38919Pfscan:PS51420PhylomeDB:Q38919PIR:T48864
PRIDE:Q0WU07PRIDE:Q38919PRO:PR:Q38919PROSITE:PS51420ProteinModelPortal:Q38919Proteomes:UP000006548Reactome:R-ATH-194840
Reactome:R-ATH-198203Reactome:R-ATH-392451Reactome:R-ATH-5666185RefSeq:NP_173437.1SMR:Q38919STRING:3702.AT1G20090.1SUPFAM:SSF52540
TAIR:AT1G20090tair10-symbols:ARAC4tair10-symbols:ATRAC4tair10-symbols:ATROP2tair10-symbols:ROP2TIGRfam:TIGR00231TIGRFAMs:TIGR00231
UniGene:At.23198UniProt:Q0WU07UniProt:Q38919
Coordinates (TAIR10) chr1:+:6967223..6968603
Molecular Weight (calculated) 21637.20 Da
IEP (calculated) 9.69
GRAVY (calculated) -0.14
Length 195 amino acids
Sequence (TAIR10)
(BLAST)
001: MASRFIKCVT VGDGAVGKTC MLISYTSNTF PTDYVPTVFD NFSANVVVDG NTVNLGLWDT AGQEDYNRLR PLSYRGADVF ILAFSLISKA SYENIAKKWI
101: PELRHYAPGV PIILVGTKLD LRDDKQFFID HPGAVPITTN QGEELKKLIG SAVYIECSSK TQQNVKAVFD AAIKVVLQPP KQKKKKKNKN RCAFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)