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AT1G20030.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.727
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pathogenesis-related thaumatin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pathogenesis-related thaumatin superfamily protein; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G75800.1); Has 1614 Blast hits to 1596 proteins in 182 species: Archae - 0; Bacteria - 45; Metazoa - 56; Fungi - 77; Plants - 1416; Viruses - 2; Other Eukaryotes - 18 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGT6eggNOG:ENOG4111GDHEMBL:AK226992EMBL:BT002528EMBL:BT006327EMBL:CP002684EnsemblPlants:AT1G20030
EnsemblPlants:AT1G20030.1entrez:838592ExpressionAtlas:Q8GUG1Gene3D:2.60.110.10GeneID:838592Gramene:AT1G20030.1hmmpanther:PTHR31048
hmmpanther:PTHR31048:SF27HOGENOM:HOG000238454InterPro:IPR001938InterPro:IPR017949KEGG:ath:AT1G20030PANTHER:PTHR31048Pfam:PF00314
Pfscan:PS51367PIRSF:PIRSF002703PRINTS:PR00347PROSITE:PS00316PROSITE:PS51367Proteomes:UP000006548RefSeq:NP_173432.2
scanprosite:PS00316SMART:SM00205SMR:Q8GUG1STRING:3702.AT1G20030.2SUPFAM:SSF49870TAIR:AT1G20030UniGene:At.19670
UniProt:Q8GUG1
Coordinates (TAIR10) chr1:+:6945850..6947017
Molecular Weight (calculated) 31559.70 Da
IEP (calculated) 4.89
GRAVY (calculated) -0.15
Length 299 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRSFTFSNK CDYTVWPGIL SNAGVSPLPT TGFVLLKGET RTINAPSSWG GRFWGRTLCS TDSDGKFSCA TGDCGSGKIE CSGAGAAPPA TLAEFTLDGS
101: GGLDFYDVSL VDGYNVQMLV VPQGGSGQNC SSTGCVVDLN GSCPSELRVN SVDGKEAVAM ACKSACEAFR QPEYCCSGAF GSPDTCKPST YSRIFKSACP
201: RAYSYAYDDK SSTFTCAKSP NYVITFCPSP NTSLKSAEEH STETMTTTSP SSGSTTSSQM VYEGALDESS GSPSTYHGVS RAITVVLLSL AFCRMWWFF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)