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AT1G20020.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25740923 (2015): plastid
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:16648217 (2006): plastid
  • PMID:16207701 (2006): plastid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ferredoxin-NADP(+)-oxidoreductase 2
Curator
Summary (TAIR10)
Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the stroma
Computational
Description (TAIR10)
ferredoxin-NADP(+)-oxidoreductase 2 (FNR2); FUNCTIONS IN: oxidoreductase activity, poly(U) RNA binding, NADPH dehydrogenase activity; INVOLVED IN: oxidation reduction, defense response to fungus, incompatible interaction, defense response to bacterium; LOCATED IN: thylakoid, chloroplast thylakoid membrane, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Ferredoxin--NADP reductase (InterPro:IPR012146); BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 1 (TAIR:AT5G66190.1); Has 6774 Blast hits to 6774 proteins in 1708 species: Archae - 20; Bacteria - 3604; Metazoa - 802; Fungi - 759; Plants - 616; Viruses - 0; Other Eukaryotes - 973 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G20020-MONOMERBioCyc:ARA:GQT-1959-MONOMERBioCyc:ARA:GQT-1960-MONOMERBioGrid:23830BRENDA:1.18.1.2EC:1.18.1.2eggNOG:COG0369
eggNOG:KOG1158EMBL:AC022472EMBL:AY062739EMBL:AY114663EMBL:CP002684EnsemblPlants:AT1G20020EnsemblPlants:AT1G20020.1
entrez:838591GeneID:838591Genevisible:Q8W493GO:GO:0004324GO:GO:0008266GO:GO:0009507GO:GO:0009534
GO:GO:0009535GO:GO:0009570GO:GO:0009579GO:GO:0009735GO:GO:0009817GO:GO:0015979GO:GO:0042742
GO:GO:0048046hmmpanther:PTHR19384hmmpanther:PTHR19384:SF82HOGENOM:HOG000220125InParanoid:Q8W493IntAct:Q8W493InterPro:IPR001433
InterPro:IPR001709InterPro:IPR015701InterPro:IPR017927InterPro:IPR017938KEGG:ath:AT1G20020KO:K02641OMA:FPATSCA
PaxDb:Q8W493Pfam:PF00175Pfam:Q8W493Pfscan:PS51384PhylomeDB:Q8W493PIR:F86333PIRSF:PIRSF000361
PRIDE:Q8W493PRINTS:PR00371PRO:PR:Q8W493PROSITE:PS51384ProteinModelPortal:Q8W493Proteomes:UP000006548RefSeq:NP_001077565.1
RefSeq:NP_001077566.1RefSeq:NP_173431.1SMR:Q8W493STRING:3702.AT1G20020.1SUPFAM:SSF52343SUPFAM:SSF63380TAIR:AT1G20020
tair10-symbols:ATLFNR2tair10-symbols:FNR2UniGene:At.24499UniPathway:UPA00091UniProt:Q8W493World-2DPAGE:0003:Q8W493
Coordinates (TAIR10) chr1:+:6942851..6944868
Molecular Weight (calculated) 41170.30 Da
IEP (calculated) 8.51
GRAVY (calculated) -0.38
Length 369 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTMNAAVS LTSSNSSSFP ATSCAIAPER IRFTKGAFYY KSNNVVTGKR VFSIKAQITT ETDTPTPAKK VEKVSKKNEE GVIVNRYRPK EPYTGKCLLN
101: TKITADDAPG ETWHMVFSHQ GEIPYREGQS VGVIADGIDK NGKPHKVRLY SIASSALGDL GNSETVSLCV KRLVYTNDQG ETVKGVCSNF LCDLAPGSDV
201: KLTGPVGKEM LMPKDPNATV IMLATGTGIA PFRSFLWKMF FEKHDDYKFN GLAWLFLGVP TTSSLLYQEE FDKMKAKAPE NFRVDYAISR EQANDKGEKM
301: YIQTRMAQYA AELWELLKKD NTFVYMCGLK GMEKGIDDIM VSLAANDGID WFDYKKQLKK AEQWNVEVY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)