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AT1G20010.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28611809 (2017): cytosol
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:19329564 (2009): peroxisome
  • PMID:17644812 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : tubulin beta-5 chain
Curator
Summary (TAIR10)
beta tubulin
Computational
Description (TAIR10)
tubulin beta-5 chain (TUB5); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process; LOCATED IN: tubulin complex, cell wall, plasma membrane, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta-1 chain (TAIR:AT1G75780.1); Has 23676 Blast hits to 23579 proteins in 4895 species: Archae - 37; Bacteria - 47; Metazoa - 4468; Fungi - 14216; Plants - 1551; Viruses - 0; Other Eukaryotes - 3357 (source: NCBI BLink).
Protein Annotations
BioGrid:23829eggNOG:COG5023eggNOG:KOG1375EMBL:AC022472EMBL:AF361585EMBL:AY093989EMBL:CP002684
EMBL:M84702EnsemblPlants:AT1G20010EnsemblPlants:AT1G20010.1entrez:838590Gene3D:1.10.287.600Gene3D:3.30.1330.20Gene3D:3.40.50.1440
GeneID:838590Genevisible:P29513GO:GO:0003924GO:GO:0005200GO:GO:0005525GO:GO:0005618GO:GO:0005774
GO:GO:0005874GO:GO:0005886GO:GO:0007017GO:GO:0009507GO:GO:0009570GO:GO:0016020GO:GO:0045298
Gramene:AT1G20010.1hmmpanther:PTHR11588hmmpanther:PTHR11588:SF97HOGENOM:HOG000165710InParanoid:P29513IntAct:P29513InterPro:IPR000217
InterPro:IPR002453InterPro:IPR003008InterPro:IPR008280InterPro:IPR013838InterPro:IPR017975InterPro:IPR018316InterPro:IPR023123
KEGG:ath:AT1G20010KO:K07375ncoils:CoilOMA:YSGDTADPANTHER:PTHR11588PaxDb:P29513Pfam:P29513
Pfam:PF00091Pfam:PF03953PhylomeDB:P29513PIR:JQ1589PRIDE:P29513PRINTS:PR01161PRINTS:PR01163
PRO:PR:P29513PROSITE:PS00227PROSITE:PS00228ProteinModelPortal:P29513Proteomes:UP000006548RefSeq:NP_564101.1scanprosite:PS00227
scanprosite:PS00228SMART:SM00864SMART:SM00865SMR:P29513STRING:3702.AT1G20010.1SUPFAM:SSF52490SUPFAM:SSF55307
TAIR:AT1G20010tair10-symbols:TUB5UniGene:At.25087UniProt:P29513
Coordinates (TAIR10) chr1:-:6938033..6940481
Molecular Weight (calculated) 50345.30 Da
IEP (calculated) 4.40
GRAVY (calculated) -0.36
Length 449 amino acids
Sequence (TAIR10)
(BLAST)
001: MREILHIQGG QCGNQIGSKF WEVICDEHGI DSTGRYSGDT ADLQLERINV YYNEASGGRY VPRAVLMDLE PGTMDSIRSG PFGQIFRPDN FVFGQSGAGN
101: NWAKGHYTEG AELIDAVLDV VRKEAENCDC LQGFQVCHSL GGGTGSGMGT LLISKIREEY PDRMMLTFSV FPSPKVSDTV VEPYNATLSV HQLVENADEC
201: MVLDNEALYD ICFRTLKLST PSFGDLNHLI SATMSGVTCS LRFPGQLNSD LRKLAVNLIP FPRLHFFMVG FAPLTSRGSQ QYISLTVPEL TQQMWDSKNM
301: MCAADPRHGR YLTASAIFRG QMSTKEVDEQ ILNIQNKNSS YFVEWIPNNV KSSVCDIPPK GLKMAATFVG NSTSIQEMFR RVSEQFTAMF RRKAFLHWYT
401: GEGMDEMEFT EAESNMNDLV AEYQQYQDAT ADEEGEYDVE EEEEGDYET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)