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AT1G19870.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytoskeleton
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:20374526 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:18433157 (2008): nucleus
  • PMID:18433157 (2008): cytosol
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16635983 (2006): plasma membrane
  • PMID:15308754 (2004): plasma membrane
  • PMID:14506206 (2003): plasma membrane
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : IQ-domain 32
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
IQ-domain 32 (iqd32); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, plasma membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 31 (TAIR:AT1G74690.1); Has 9103 Blast hits to 6594 proteins in 683 species: Archae - 22; Bacteria - 1108; Metazoa - 3792; Fungi - 1037; Plants - 1107; Viruses - 33; Other Eukaryotes - 2004 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJ9XeggNOG:ENOG410Y9MXEMBL:AC007797EMBL:AK220728EMBL:AY084918EMBL:AY102110EMBL:BT001081
EMBL:CP002684EnsemblPlants:AT1G19870EnsemblPlants:AT1G19870.1entrez:838575GeneID:838575Genevisible:Q9FXI5GO:GO:0005634
GO:GO:0005829GO:GO:0005875GO:GO:0005886GO:GO:0009737GO:GO:0009941Gramene:AT1G19870.1hmmpanther:PTHR32295
hmmpanther:PTHR32295:SF16HOGENOM:HOG000083907InParanoid:Q9FXI5InterPro:IPR000048InterPro:IPR025064iPTMnet:Q9FXI5KEGG:ath:AT1G19870
OMA:SFGYDQEPaxDb:Q9FXI5Pfam:PF00612Pfam:PF13178Pfam:Q9FXI5Pfscan:PS50096PIR:A86332
PRIDE:Q9FXI5PRO:PR:Q9FXI5PROSITE:PS50096ProteinModelPortal:Q9FXI5Proteomes:UP000006548RefSeq:NP_564097.1SMART:SM00015
SMR:Q9FXI5STRING:3702.AT1G19870.1SwissPalm:Q9FXI5TAIR:AT1G19870tair10-symbols:iqd32UniGene:At.16210UniGene:At.68129
UniProt:Q9FXI5
Coordinates (TAIR10) chr1:-:6895400..6898539
Molecular Weight (calculated) 86886.50 Da
IEP (calculated) 4.94
GRAVY (calculated) -0.90
Length 794 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRSPASSCL RLISCSGGDD TSADPNSTAL ENKSSGDKRG WSFRKKSGKQ RGLITSVVSE TTPASRTRET LESALLKSPS PDNNNVSEKQ QQSFSVDEKK
101: SQLPVVTYVA EPVDEKKTQS VIEEKTELLS VEEQIDHRTE VSPVIVESKG TETEEDDLIG TELQGPSAAD AAKIEEDVTS EVEMASKVEP EESESDDVII
201: VRKESDEKVD EKLDESVIVV IQAAVRGFLA RRELLRSKKV IKLQAAVRGH LVRSQAMGSL RCVQAIVKMQ AMVRARHSTK DGSRVSATSD KSEPNAAAQK
301: LLENKFAKHL MESTPKTKPI NIKCDPTKPS SAWNWLERWM SVPKPEKTSK ANLTTEEQNL EETQNVKISP QADFVNSDST VENKTETDMP SYEASKVEGQ
401: NVELSETEKM SQYDSPEASA EVYYDSIQSQ PLAAKPDSLL EEPEYVDGQI KHSLKRKVSN PSFIAAQSKF EELTSSTGSN KAMTLSSKDD VLGEEGKTDI
501: DSPDTTNTIK DHSLEDVTPA ELSGSECGTE LSVTSSLDTL EKKSDAEGAE PRVEAKLLED DTFKTDQAEL IEIDVKDATS MGTVEDPKEK VENAKDEVEI
601: SATHHEPVIS TPDSKKRRAE DESGPQAYAL SEGALTPMTI TESQATPASQ ASSSVKARKG KSEKSGSSQK RKVSKKITSS PKQEIGTGEA TEQEEGKEQK
701: SGRRTSFGYD QEARESSGGK NSLPRFMQPT QSAKAKVQEH NSPRSSPDLQ ERDVVSAKKR HSLPGVTNGK QVSPRIQRSA SQAQQGTKDR KWQR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)