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AT1G19830.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.997
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SAUR-like auxin-responsive protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SAUR-like auxin-responsive protein family ; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT1G75580.1); Has 1272 Blast hits to 1255 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1271; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVKGeggNOG:ENOG41105TJEMBL:AC007797EMBL:AK117905EMBL:BT004708EMBL:CP002684EnsemblPlants:AT1G19830
EnsemblPlants:AT1G19830.1entrez:838570GeneID:838570GO:GO:0009733Gramene:AT1G19830.1hmmpanther:PTHR31374hmmpanther:PTHR31374:SF41
HOGENOM:HOG000238628IntAct:Q9FXI0InterPro:IPR003676KEGG:ath:AT1G19830KO:K14488OMA:QSSEYNDPfam:PF02519
PhylomeDB:Q9FXI0PIR:D86331Proteomes:UP000006548RefSeq:NP_173411.1STRING:3702.AT1G19830.1TAIR:AT1G19830UniGene:At.41733
UniProt:Q9FXI0
Coordinates (TAIR10) chr1:+:6852230..6852583
Molecular Weight (calculated) 13332.20 Da
IEP (calculated) 6.94
GRAVY (calculated) -0.23
Length 117 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIINRSKLT QTTMIKQILK RCSSLGKKQS SEYNDTHEHD GDSLPLDVPK GHFVVYVGGN RVRYVLPISF LTRPEFQLLL QQAEEEFGFD HNMGLTIPCE
101: EVAFKSLITS MLQPTYI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)