AT1G19800.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : trigalactosyldiacylglycerol 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a permease-like protein involved in lipid transfer from the ER to the chloroplast, more specifically, transfer of phosphatidate across the chloroplast inner membrane. Mutant leaves accumulate trigalactosyldiacylglycerol, triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
trigalactosyldiacylglycerol 1 (TGD1); FUNCTIONS IN: lipid transporter activity; INVOLVED IN: lipid transport; LOCATED IN: chloroplast outer membrane, chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF140 (InterPro:IPR003453); Has 5322 Blast hits to 5322 proteins in 1401 species: Archae - 0; Bacteria - 4515; Metazoa - 1; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 758 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:6846812..6847954 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37909.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.81 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.36 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 350 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMQTCCIHQS FCFPHRVFPR FDASIGIKPP KLCQVGFIGK TQSYGISSPI RQRRLYVNLN ANDGHPSMSM LEEETSTENN APSQEAELPF SKWSPSKYIW 101: RGLSVPIIAG QVVLRILKGK IHWRNTLQQL ERTGPKSLGV CLLTSTFVGM AFTIQFVREF TRLGLNRSIG GVLALAFSRE LSPVITSIVV AGRMGSAFAA 201: ELGTMQVSEQ TDTLRVLGAD PIDYLITPRV IASCLALPFL TLMCFTVGMA SSALLSDAVY GISINIIMDS AHRALRPWDI VSAMIKSQVF GAIISVISCS 301: WGVTTTGGAK GVGESTTSAV VMSLVGIFIA DFVLSSFFFQ GAGDSLKNCV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)