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AT1G19740.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ATP-dependent protease La (LON) domain protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATP-dependent protease La (LON) domain protein; FUNCTIONS IN: ATP-dependent peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111); BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain protein (TAIR:AT1G75460.1); Has 3644 Blast hits to 3644 proteins in 880 species: Archae - 0; Bacteria - 1707; Metazoa - 175; Fungi - 37; Plants - 117; Viruses - 0; Other Eukaryotes - 1608 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2802eggNOG:KOG4159EMBL:AC007797EMBL:AY128391EMBL:BT000129EMBL:CP002684EnsemblPlants:AT1G19740
EnsemblPlants:AT1G19740.1entrez:838563GeneID:838563GO:GO:0004176GO:GO:0009507GO:GO:0009570Gramene:AT1G19740.1
hmmpanther:PTHR23327hmmpanther:PTHR23327:SF12HOGENOM:HOG000264785IntAct:Q9FXH3InterPro:IPR003111InterPro:IPR015947KEGG:ath:AT1G19740
ncoils:CoilOMA:NIFEERYPfam:PF02190PhylomeDB:Q9FXH3PIR:E86330Proteomes:UP000006548RefSeq:NP_173404.1
SMART:SM00464STRING:3702.AT1G19740.1SUPFAM:SSF88697TAIR:AT1G19740UniGene:At.16207UniProt:Q9FXH3
Coordinates (TAIR10) chr1:+:6824396..6825232
Molecular Weight (calculated) 31372.70 Da
IEP (calculated) 8.31
GRAVY (calculated) -0.30
Length 278 amino acids
Sequence (TAIR10)
(BLAST)
001: MALPSTVSSP SFKSTPPYLS AFNPKPLHLP ATYRSINRRS CKLLSFRCSS SSFSEKHHNN ANPPKSDDLV ELPLFPLPLV LFPGATIPLQ IFEFRYRVMM
101: QTLLQSDLRF GVVYSDAVSG SAAGIGCVGE IVKHERLVDD RFFLICKGQE RFRVTDLVRT KPYLVAKVTW LEDRPSGEEN LDELANEVEV LMKEVIRLSN
201: RLNGKPDKES QDLRKNQFPT PFSFFVGSTF EGAPMEQQAL LELEDTAARL KRERETLRNT LNYLTAASAV KDVFPSQP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)