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AT1G19690.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: cellular metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); Has 3422 Blast hits to 3422 proteins in 1044 species: Archae - 54; Bacteria - 2233; Metazoa - 3; Fungi - 5; Plants - 67; Viruses - 4; Other Eukaryotes - 1056 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0451eggNOG:ENOG410ITWBEMBL:BT026024EMBL:CP002684EnsemblPlants:AT1G19690EnsemblPlants:AT1G19690.1entrez:838556
Gene3D:3.40.50.720GeneID:838556GO:GO:0003824GO:GO:0009507GO:GO:0050662Gramene:AT1G19690.1hmmpanther:PTHR10366
hmmpanther:PTHR10366:SF430HOGENOM:HOG000240105InterPro:IPR001509InterPro:IPR016040KEGG:ath:AT1G19690OMA:MHVMIFGPfam:PF01370
PhylomeDB:Q147R9Proteomes:UP000006548RefSeq:NP_564095.1STRING:3702.AT1G19690.1SUPFAM:SSF51735TAIR:AT1G19690UniGene:At.41738
UniGene:At.68550UniProt:Q147R9
Coordinates (TAIR10) chr1:-:6807925..6809562
Molecular Weight (calculated) 39754.40 Da
IEP (calculated) 8.67
GRAVY (calculated) -0.49
Length 352 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVFQLPSLS PEIPFRFTPT PLKFSNRRRI NFFRPLSATD DSRSGAPDPE SPNQMFILGM GFVGGFFAQQ LKESDWVVSG TCRSDSKKKE WEKRGINLHP
101: FSADSPEWSL LDSVKDYTHL LISIPPLADI GDPMLRNVEL VRDKLSSGNL RWLCYLSSTS VYGDCGGAWV NENHLPNPKT QSAKVRLAAE QGWLSLGRDL
201: GVSTQILRLG GIYGPGRSAI DTLLKQERLS EGQKRRASRK FTSRVHVEDI CQVLKAATEK PASGEIYNIV DDDPAAREEV FEYALELIEK RWPGNITTKP
301: FPFLYESREE SSLRGEKRVC NERMKDKLGV KLLYPSYKSG LQSIVENMDN RF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)