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AT1G19620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.849
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 44 Blast hits to 24 proteins in 12 species: Archae - 0; Bacteria - 8; Metazoa - 22; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JX2IeggNOG:ENOG41104CUEMBL:CP002684EnsemblPlants:AT1G19620
EnsemblPlants:AT1G19620.1entrez:838549GeneID:838549Gramene:AT1G19620.1
InParanoid:F4HP85KEGG:ath:AT1G19620OMA:VVEMSSKPaxDb:F4HP85
PRIDE:F4HP85ProteinModelPortal:F4HP85Proteomes:UP000006548RefSeq:NP_173392.1
TAIR:AT1G19620TMHMM:TMhelixUniGene:At.41740UniProt:F4HP85
Coordinates (TAIR10) chr1:+:6784020..6785075
Molecular Weight (calculated) 36325.90 Da
IEP (calculated) 6.96
GRAVY (calculated) -0.97
Length 317 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAEKAEASW TYENLFQNCK YTVGLSAVVA FGYCCLPVIV NQLHGKIQTT EKKEPDLYDQ YVAAVPPPST VTPFDSYNMS KFEDVGYYNN STYRENVPAF
101: QAVKAVEESS YSYDQEVVEM SSKSYRRTSR SEKKMTERMV EYRKTETERV TKTGSWRSQS MDGLSSGEEF RRTIQTFVSE QKKMHIIRAS GVDDQLENGY
201: IHRASGVDDR VHYWEHGAVP QWQNDDVPQL QNGGVPHWWQ NGSVSQLQNS DVPQWQNGGV LQLQNGDVPQ WQTGGVSQLQ NGVHEPQNGI VQWKGSRDDG
301: SGRHRHRHGH RSRKHRQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)