AT1G19540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.753 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NmrA-like negative transcriptional regulator family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
NmrA-like negative transcriptional regulator family protein; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: NmrA-like negative transcriptional regulator family protein (TAIR:AT1G75280.1); Has 2081 Blast hits to 2077 proteins in 492 species: Archae - 4; Bacteria - 817; Metazoa - 4; Fungi - 543; Plants - 557; Viruses - 7; Other Eukaryotes - 149 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:6765713..6767247 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34367.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.27 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.02 | ||||||||||||||||||||||||||||
| Length | 310 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTSKILVIGA TGLIGKVLVE ESAKSGHATF ALVREASLSD PVKAQLVERF KDLGVTILYG SLSDKESLVK AIKQVDVVIS AVGRFQTEIL NQTNIIDAIK 101: ESGNVKRFLP SEFGNDVDRT VAIEPTLSEF ITKAQIRRAI EAAKIPYTYV VSGCFAGLFV PCLGQCHLRL RSPPRDKVSI YDTGNGKAIV NTEEDIVAYT 201: LKAVDDPRTL NKILYIHPPN YIVSQNDMVG LWEEKIGKTL EKTYVSEEEL LKTIQESKPP MDFLVGLIHT ILVKSDFTSF TIDPSFGVEA SELYPEVKYT 301: SVDEFLNRFI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)