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AT1G19530.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.986
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf apex, inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 47 Blast hits to 47 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:838540eggNOG:ENOG410J4TEeggNOG:ENOG410YWFSEMBL:AF370213EMBL:AY056353EMBL:AY087914EMBL:CP002684
EnsemblPlants:AT1G19530EnsemblPlants:AT1G19530.1entrez:838540GeneID:838540GO:GO:0009061Gramene:AT1G19530.1hmmpanther:PTHR33872
hmmpanther:PTHR33872:SF2HOGENOM:HOG000240526IntAct:Q93WK6KEGG:ath:AT1G19530OMA:EAFWKQHPhylomeDB:Q93WK6Proteomes:UP000006548
RefSeq:NP_564090.1STRING:3702.AT1G19530.1TAIR:AT1G19530UniGene:At.20370UniProt:Q93WK6
Coordinates (TAIR10) chr1:+:6763976..6764686
Molecular Weight (calculated) 13656.90 Da
IEP (calculated) 9.84
GRAVY (calculated) -1.13
Length 117 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSLMSGWDS RVRDPKSVRR CKSLTREEID TFWKTKKKNE EEEHVQAFSK LVTQEGAQSQ AKEKKSVDDL FENQSKSSGW WRKTYWAFLN EPREEEGRPN
101: NYVSQFKVAH IAKIAGS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)