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AT1G19510.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RAD-like 5
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RAD-like 5 (RL5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Homeodomain-like (InterPro:IPR009057), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: RAD-like 6 (TAIR:AT1G75250.2); Has 606 Blast hits to 606 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 147; Fungi - 0; Plants - 454; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5269eggNOG:KOG0724EMBL:AC025808EMBL:AK119034EMBL:AY519524EMBL:BT005657EMBL:CP002684
EMBL:DQ395347EnsemblPlants:AT1G19510EnsemblPlants:AT1G19510.1entrez:838537GeneID:838537Genevisible:Q8GW75GO:GO:0003677
GO:GO:0005634GO:GO:0006351GO:GO:0006355Gramene:AT1G19510.1hmmpanther:PTHR24078hmmpanther:PTHR24078:SF177HOGENOM:HOG000238103
InParanoid:Q8GW75InterPro:IPR001005InterPro:IPR009057InterPro:IPR017877KEGG:ath:AT1G19510ncoils:CoilOMA:MKNMRIQ
PaxDb:Q8GW75Pfam:Q8GW75Pfscan:PS50090PhylomeDB:Q8GW75PRO:PR:Q8GW75ProteinModelPortal:Q8GW75Proteomes:UP000006548
RefSeq:NP_564087.2SMART:SM00717SMR:Q8GW75STRING:3702.AT1G19510.1SUPFAM:SSF46689TAIR:AT1G19510tair10-symbols:ATRL5
tair10-symbols:RL5tair10-symbols:RSM4UniGene:At.41742UniProt:Q8GW75
Coordinates (TAIR10) chr1:-:6756483..6757290
Molecular Weight (calculated) 11445.60 Da
IEP (calculated) 8.93
GRAVY (calculated) -0.68
Length 100 amino acids
Sequence (TAIR10)
(BLAST)
1: MASSSMSSSS SWTSKQNKMF ERALAVYDKD TPDRWQNVAK AVGSKSAEEV KRHYDILVED LMNIEQDLVP LPKYKTVDVG SKSRGIDDFD LRLMKNMRIQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)