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AT1G19485.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AT hook, DNA-binding motif (InterPro:IPR017956), A.T hook-like (InterPro:IPR020478), WD40 repeat (InterPro:IPR001680), HMG-I/HMG-Y, DNA-binding, conserved site (InterPro:IPR000637), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); Has 323 Blast hits to 302 proteins in 88 species: Archae - 0; Bacteria - 11; Metazoa - 131; Fungi - 67; Plants - 67; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IRV3eggNOG:ENOG4112BESEMBL:CP002684EnsemblPlants:AT1G19485EnsemblPlants:AT1G19485.1EnsemblPlants:AT1G19485.2entrez:838534
Gene3D:2.130.10.10GeneID:838534GO:GO:0003677GO:GO:0006355Gramene:AT1G19485.1Gramene:AT1G19485.2hmmpanther:PTHR15052
hmmpanther:PTHR15052:SF2InterPro:IPR000637InterPro:IPR001680InterPro:IPR015943InterPro:IPR017956InterPro:IPR017986KEGG:ath:AT1G19485
KO:K15200ncoils:CoilOMA:AWAPGESPfam:PF02178PRINTS:PR00929PROSITE:PS00354Proteomes:UP000006548
RefSeq:NP_001185037.1RefSeq:NP_564086.1scanprosite:PS00354SMART:SM00320SMART:SM00384SMR:F4HP69SUPFAM:SSF50978
TAIR:AT1G19485UniGene:At.41745UniProt:F4HP69
Coordinates (TAIR10) chr1:+:6747167..6751443
Molecular Weight (calculated) 90101.70 Da
IEP (calculated) 8.06
GRAVY (calculated) -0.51
Length 815 amino acids
Sequence (TAIR10)
(BLAST)
001: MDGEECNISL FDYSAESHLK AVESITDLCG EANADIDEND INILSSSVTF LREWRHYNFE PKSFAFYNEA EKNHQPKDIN SQTLPQFSSA RAPKVKIHDD
101: ESSSSGEISK DFVMHVGGSV WAMEWCPRVH GNPDAQAKCE FLAVATHPPD SYSHKIGIPL IGRGIIQIWC IINATCKKDS GQVSDKGKKL TGKSRKQPSG
201: ETTETTEPKK PRGRPRKHPV ETTEPKKPRG RPRKKSTAEL PVELDDDVLY VEALSVRYPE NSVVPATPLR ILRETPVTET KVNNEGSGQV LSSDNANIKL
301: PVRRKRQKTK STEESCTPMI LEYSEAVGNV PSKPSSGISE DIVALPRVVL CLAHNGKVVW DMKWRPSYAG DSLNKHSMGY LAVLLGNGSL EVWDVPMPKA
401: TSALYLSSKK AATDPRFVKL APVFKCSNLK CGDTKSIPLT VEWSTLGNPD FLLAGCHDGT VALWKFSTTK SSEDTRPLLF FSADTAPIRA VAWAPGESDQ
501: ESANIVATAG HAGLKFWDLR DPFRPLWDLH PVPRFIYSLD WLQDPSCVLL SFDDGTLRIL SLVKVAYDVP ATGRPYPNTK QQGLSVYNCS TFPIWSIQVS
601: RLTGIAAYCT ADGSIFHFEL TTKAVEKDTR NRTPHYLCGQ LTMKDSTFIV HSPVPDIPIV LKKPVGETGE KQRCLRSLLN ESPSRYASNV SDVQPLAFAH
701: VEDPGLESES EGTNNKAAKS KAKKGKNNAR AEEDENSRAL VCVKEDGGEE EGRRKAASNN SNGMKAEGFP PKMVAMHRVR WNMNKGSERW LCYGGAAGIV
801: RCQEIAPTSD WKPRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)