AT1G19485.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AT hook, DNA-binding motif (InterPro:IPR017956), A.T hook-like (InterPro:IPR020478), WD40 repeat (InterPro:IPR001680), HMG-I/HMG-Y, DNA-binding, conserved site (InterPro:IPR000637), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); Has 323 Blast hits to 302 proteins in 88 species: Archae - 0; Bacteria - 11; Metazoa - 131; Fungi - 67; Plants - 67; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:6747167..6751443 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 90101.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.06 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.51 | ||||||||||||||||||||||||||||||||||||||||
| Length | 815 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDGEECNISL FDYSAESHLK AVESITDLCG EANADIDEND INILSSSVTF LREWRHYNFE PKSFAFYNEA EKNHQPKDIN SQTLPQFSSA RAPKVKIHDD 101: ESSSSGEISK DFVMHVGGSV WAMEWCPRVH GNPDAQAKCE FLAVATHPPD SYSHKIGIPL IGRGIIQIWC IINATCKKDS GQVSDKGKKL TGKSRKQPSG 201: ETTETTEPKK PRGRPRKHPV ETTEPKKPRG RPRKKSTAEL PVELDDDVLY VEALSVRYPE NSVVPATPLR ILRETPVTET KVNNEGSGQV LSSDNANIKL 301: PVRRKRQKTK STEESCTPMI LEYSEAVGNV PSKPSSGISE DIVALPRVVL CLAHNGKVVW DMKWRPSYAG DSLNKHSMGY LAVLLGNGSL EVWDVPMPKA 401: TSALYLSSKK AATDPRFVKL APVFKCSNLK CGDTKSIPLT VEWSTLGNPD FLLAGCHDGT VALWKFSTTK SSEDTRPLLF FSADTAPIRA VAWAPGESDQ 501: ESANIVATAG HAGLKFWDLR DPFRPLWDLH PVPRFIYSLD WLQDPSCVLL SFDDGTLRIL SLVKVAYDVP ATGRPYPNTK QQGLSVYNCS TFPIWSIQVS 601: RLTGIAAYCT ADGSIFHFEL TTKAVEKDTR NRTPHYLCGQ LTMKDSTFIV HSPVPDIPIV LKKPVGETGE KQRCLRSLLN ESPSRYASNV SDVQPLAFAH 701: VEDPGLESES EGTNNKAAKS KAKKGKNNAR AEEDENSRAL VCVKEDGGEE EGRRKAASNN SNGMKAEGFP PKMVAMHRVR WNMNKGSERW LCYGGAAGIV 801: RCQEIAPTSD WKPRR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)