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AT1G19370.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75140.1); Has 45 Blast hits to 43 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGFZeggNOG:ENOG410ZQKEEMBL:AC025808EMBL:CP002684EnsemblPlants:AT1G19370EnsemblPlants:AT1G19370.1entrez:838520
GeneID:838520GO:GO:0005783GO:GO:0016021Gramene:AT1G19370.1hmmpanther:PTHR35464hmmpanther:PTHR35464:SF1HOGENOM:HOG000029804
InterPro:IPR017986KEGG:ath:AT1G19370ncoils:CoilOMA:IRETECEPhylomeDB:Q9LN61PIR:H86326Proteomes:UP000006548
RefSeq:NP_564083.1STRING:3702.AT1G19370.1SUPFAM:SSF50978TAIR:AT1G19370TMHMM:TMhelixUniGene:At.16705UniGene:At.71862
UniProt:Q9LN61
Coordinates (TAIR10) chr1:-:6692904..6694721
Molecular Weight (calculated) 67531.70 Da
IEP (calculated) 6.80
GRAVY (calculated) -0.26
Length 605 amino acids
Sequence (TAIR10)
(BLAST)
001: MADPLNGKSF FICFSLLFSF TLLFISPLYA TESPVIEDVS TDVAVSVSET NREAVLLHNL EELVKNLTEL VANLDAKLSA TPLKEKNEIS VDDDIGEEKE
101: RGRAKAFSVT KYSPFWSERF QFTSAVKLNS DATCINVLPF RDFEGSSKYF AIGDSKGRVY VFLRNGDVLI EFFTTVDSPV TAMVSYSSVF KNSSFVVTGH
201: QNGAVLLHRI HEGSNGEDWN SNSVSMEHVG KFDVDDSADP VTLLEVHHVG RVRYILATDL SGKLTVLTEN RTVYGSVIPS SRPLVFLKQR LLFLTESGAG
301: SLDLRSMKIR ETECEGLNHS LARTYVFDAA ERSKAYGFTS EGEIIHVLLH GDIMNFKCRV RSKKKFQMEE PVALQSIKGY LLVINEEKVF AFNVSTQHYV
401: RTAGPRLLFS AGLEEIRSAF LSHRESSSRT TTVVKTRPLI ASDRENLLVI GLENGYFAVY KSKLPTLKGD FNTMLWSSPV FFFILFLFGA WHFFAKKKES
501: LTAWGPDDPF TPTGAQNSSA KEPTFTEPSR RNDDLMDLRR RYAGGSYRSV GANDPSSRAP VDGNYRTTAQ DHNNYRGGGS GLDSNGFGNR RDHLFGNNKV
601: LDNES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)