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AT1G19360.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:22923678 (2012): Golgi
  • PMID:22430844 (2012): Golgi
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleotide-diphospho-sugar transferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleotide-diphospho-sugar transferase family protein; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT1G75110.1); Has 297 Blast hits to 291 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 280; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Protein Annotations
CAZy:GT77EC:2.4.2.-eggNOG:ENOG410IFY8eggNOG:ENOG410YBEWEMBL:AC025808EMBL:AK229032EMBL:AY088117
EMBL:BT025990EMBL:CP002684EMBL:KJ138999EnsemblPlants:AT1G19360EnsemblPlants:AT1G19360.1entrez:838519GeneID:838519
Genevisible:Q9LN62GO:GO:0000139GO:GO:0005768GO:GO:0005794GO:GO:0005802GO:GO:0016021GO:GO:0016757
GO:GO:0071555GO:GO:0080147Gramene:AT1G19360.1hmmpanther:PTHR10994hmmpanther:PTHR10994:SF3HOGENOM:HOG000012501InterPro:IPR005069
InterPro:IPR029044KEGG:ath:AT1G19360ncoils:CoilOMA:NFCKSNDPaxDb:Q9LN62Pfam:PF03407Pfscan:PS51257
PhylomeDB:Q9LN62ProteinModelPortal:Q9LN62Proteomes:UP000006548RefSeq:NP_564082.1STRING:3702.AT1G19360.1SUPFAM:SSF53448SwissPalm:Q9LN62
TAIR:AT1G19360TMHMM:TMhelixUniGene:At.28061UniProt:Q9LN62
Coordinates (TAIR10) chr1:-:6690672..6692211
Molecular Weight (calculated) 48253.90 Da
IEP (calculated) 8.29
GRAVY (calculated) -0.26
Length 428 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGRRDRSQQ LRGSRIAIAI LIGIFIGCVC AVLFPYGFFN SSSSLKASEH LSKSSNQVGS SACESPERVK MLKSDFVTLS EKNAELKKQV RELTEKLRLA
101: EQGSDNARKQ VLALGTQIKA GPFGTVKSLR TNPTILPDES INPRLAKILE EIAVDKEVIV ALANANVKAM LEVQIASIKR VGITNYLVVA LDDYIENLCK
201: ENDVAYYKRD PDKDVDTVGK TGGNHAVSGL KFRVLREFLQ LGYGVLLSDV DIVFLQNPFS HLYRDSDVES MSDGHDNHTA YGFNDVFDEP AMGWARYAHT
301: MRIWVFNSGF FYLRPTIPSI ELLDRVADRL SKAKVWDQAV FNEELFYPSH PEYTALHASK RVMDMYEFMN SKVLFKTVRK NHELKKKVKP VIVHVNYHPD
401: KLNRMQAVVE FYVNGKQDAL DSFPDGSE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)