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AT1G19330.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.807
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1); Has 145 Blast hits to 145 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJQJeggNOG:ENOG41125ASEMBL:AK176354EMBL:AY088001EMBL:BT025640EMBL:CP002684EnsemblPlants:AT1G19330
EnsemblPlants:AT1G19330.1entrez:838515ExpressionAtlas:Q8LA64GeneID:838515Gramene:AT1G19330.1hmmpanther:PTHR13286hmmpanther:PTHR13286:SF6
HOGENOM:HOG000005661InterPro:IPR024145InterPro:IPR025718PANTHER:PTHR13286Pfam:PF13867PhylomeDB:Q8LA64Proteomes:UP000006548
RefSeq:NP_564079.1SMR:Q8LA64STRING:3702.AT1G19330.3TAIR:AT1G19330UniGene:At.16707UniProt:Q8LA64
Coordinates (TAIR10) chr1:-:6680824..6683290
Molecular Weight (calculated) 27464.70 Da
IEP (calculated) 8.10
GRAVY (calculated) -0.50
Length 247 amino acids
Sequence (TAIR10)
(BLAST)
001: MLEAVDSSGV VNGGFPQIQS FYGDCSSEEE LSVLPRHTKV VVTGNNRTKS VLVGLQGVVK KAVGLGGWHW LVLTNGIEVK LQRNALSVLE PPTGNEEDDD
101: LDFENTQRNG SDMIVSFPAS EDTLKPHKSK LRGQRSSRSS HKTMSRSLSS DSQSKSSGFT PPENMKVDLS KLEMPALLNY WRHFNLVDAI PNPSKEQLID
201: IVQRHFMSQQ MDELQVIVGF VQAAKRMKKA CKFQSKESRN TDLNCIS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)