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AT1G19310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.971
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G23780.1); Has 4673 Blast hits to 4665 proteins in 300 species: Archae - 0; Bacteria - 6; Metazoa - 2731; Fungi - 589; Plants - 822; Viruses - 25; Other Eukaryotes - 500 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111IHVeggNOG:KOG0823EMBL:AC025808EMBL:AY057705EMBL:AY085230EMBL:AY116959EMBL:CP002684
EnsemblPlants:AT1G19310EnsemblPlants:AT1G19310.1entrez:838513Gene3D:3.30.40.10GeneID:838513GO:GO:0008270GO:GO:0016021
Gramene:AT1G19310.1hmmpanther:PTHR12313hmmpanther:PTHR12313:SF10HOGENOM:HOG000238304IntAct:Q9LN67InterPro:IPR001841InterPro:IPR013083
InterPro:IPR017907KEGG:ath:AT1G19310KO:K10666OMA:WLRIHSHPfam:PF13920Pfscan:PS50089PhylomeDB:Q9LN67
PIR:E86326PROSITE:PS00518PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_564078.1scanprosite:PS00518SMART:SM00184
SMR:Q9LN67STRING:3702.AT1G19310.1SUPFAM:SSF57850TAIR:AT1G19310TMHMM:TMhelixUniGene:At.16708UniProt:Q9LN67
Coordinates (TAIR10) chr1:-:6676424..6677104
Molecular Weight (calculated) 24518.00 Da
IEP (calculated) 7.27
GRAVY (calculated) -0.18
Length 226 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDVPSCSSG NDTNNNDSSN FECNICLDLA QDPIVTLCGH LFCWPCLYKW LHLHSQSKDC PVCKAVIEED RLVPLYGRGK SSADPRSKSI PGLEVPNRPS
101: GQRPETAQPP DPNHGFAHHH GFGGFMGGFA APMASARFGN VTLSAAFGGL IPSLFNLHFH GFPDAAMYGA AASGGFPHGF SNPFHGGHSH MHSYQRHTGR
201: QGQQDHHLRI LLLIVFVVVV FSLFLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)