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AT1G19270.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.967
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DA1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DA1 (DA1); CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), Ubiquitin interacting motif (InterPro:IPR003903), Protein of unknown function DUF3633 (InterPro:IPR022087); BEST Arabidopsis thaliana protein match is: LIM domain-containing protein (TAIR:AT4G36860.1); Has 3538 Blast hits to 2617 proteins in 167 species: Archae - 0; Bacteria - 18; Metazoa - 3009; Fungi - 63; Plants - 177; Viruses - 0; Other Eukaryotes - 271 (source: NCBI BLink).
Protein Annotations
BioGrid:23749eggNOG:ENOG410XRD4eggNOG:KOG1703EMBL:AC069143EMBL:BX816571EMBL:CP002684EnsemblPlants:AT1G19270
EnsemblPlants:AT1G19270.1entrez:838510Gene3D:2.10.110.10GeneID:838510Genevisible:P0C7Q8GO:GO:0008270GO:GO:0043130
GO:GO:0046621GO:GO:0048317GO:GO:0048482Gramene:AT1G19270.1hmmpanther:PTHR24209hmmpanther:PTHR24209:SF10HOGENOM:HOG000239946
InterPro:IPR001781InterPro:IPR003903InterPro:IPR022087KEGG:ath:AT1G19270OMA:ERYHPKCPaxDb:P0C7Q8Pfam:P0C7Q8
Pfam:PF00412Pfam:PF12315Pfscan:PS50023Pfscan:PS50330PhylomeDB:P0C7Q8PIR:D86326PRIDE:P0C7Q8
PRO:PR:P0C7Q8PROSITE:PS00142PROSITE:PS00478PROSITE:PS50023PROSITE:PS50330ProteinModelPortal:P0C7Q8Proteomes:UP000006548
RefSeq:NP_173361.1scanprosite:PS00478SMART:SM00132SMART:SM00726SMR:P0C7Q8STRING:3702.AT1G19270.1SUPFAM:SSF57716
TAIR:AT1G19270tair10-symbols:DA1UniGene:At.21826UniProt:P0C7Q8
Coordinates (TAIR10) chr1:+:6663327..6665845
Molecular Weight (calculated) 60367.60 Da
IEP (calculated) 6.40
GRAVY (calculated) -0.73
Length 532 amino acids
Sequence (TAIR10)
(BLAST)
001: MGWFNKIFKG SNQRLRVGNN KHNHNVYYDN YPTASHDDEP SAADTDADND EPHHTQEPST SEDNTSNDQE NEDIDRAIAL SLLEENQEQT SISGKYSMPV
101: DEDEQLARAL QESMVVGNSP RHKSGSTYDN GNAYGAGDLY GNGHMYGGGN VYANGDIYYP RPITFQMDFR ICAGCNMEIG HGRFLNCLNS LWHPECFRCY
201: GCSQPISEYE FSTSGNYPFH KACYRERYHP KCDVCSHFIP TNHAGLIEYR AHPFWVQKYC PSHEHDATPR CCSCERMEPR NTRYVELNDG RKLCLECLDS
301: AVMDTMQCQP LYLQIQNFYE GLNMKVEQEV PLLLVERQAL NEAREGEKNG HYHMPETRGL CLSEEQTVST VRKRSKHGTG KWAGNITEPY KLTRQCEVTA
401: ILILFGLPRL LTGSILAHEM MHAWMRLKGF RTLSQDVEEG ICQVMAHKWL DAELAAGSTN SNAASSSSSS QGLKKGPRSQ YERKLGEFFK HQIESDASPV
501: YGDGFRAGRL AVHKYGLRKT LEHIQMTGRF PV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)