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AT1G19180.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : jasmonate-zim-domain protein 1
Curator
Summary (TAIR10)
JAZ1 is a nuclear-localized protein involved in jasmonate signaling. JAZ1 transcript levels rise in response to a jasmonate stimulus. JAZ1 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ1:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation. The Jas domain appears to be important for JAZ1-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2.
Computational
Description (TAIR10)
jasmonate-zim-domain protein 1 (JAZ1); CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: TIFY domain/Divergent CCT motif family protein (TAIR:AT1G74950.1); Has 439 Blast hits to 432 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 439; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:23740DIP:DIP-39129NeggNOG:ENOG410IZA3eggNOG:ENOG410ZDCDEMBL:AC069143EMBL:AF332421EMBL:AY039894
EMBL:AY058863EMBL:AY065146EMBL:AY081633EMBL:AY081738EMBL:AY087830EMBL:CP002684EnsemblPlants:AT1G19180
EnsemblPlants:AT1G19180.1entrez:838501EvolutionaryTrace:Q9LMA8ExpressionAtlas:Q9LMA8GeneID:838501Genevisible:Q9LMA8GO:GO:0003714
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0009555GO:GO:0009611GO:GO:0009753GO:GO:0009867
GO:GO:0009908GO:GO:0031347GO:GO:0042742GO:GO:1900067GO:GO:1903507GO:GO:2000022hmmpanther:PTHR33077
hmmpanther:PTHR33077:SF13HOGENOM:HOG000239787InParanoid:Q9LMA8IntAct:Q9LMA8InterPro:IPR010399InterPro:IPR018467KEGG:ath:AT1G19180
KO:K13464OMA:EASNMESPaxDb:Q9LMA8PDB:3OGKPDB:3OGLPDB:3OGMPDB:4YZ6
PDBsum:3OGKPDBsum:3OGLPDBsum:3OGMPDBsum:4YZ6Pfam:PF06200Pfam:PF09425Pfam:Q9LMA8
Pfscan:PS51320PhylomeDB:Q9LMA8PIR:C86325PRIDE:Q9LMA8PRO:PR:Q9LMA8PROSITE:PS51320ProteinModelPortal:Q9LMA8
Proteomes:UP000006548RefSeq:NP_564075.1SMART:SM00979STRING:3702.AT1G19180.1TAIR:AT1G19180tair10-symbols:JAZ1tair10-symbols:TIFY10A
UniGene:At.22658UniProt:Q9LMA8
Coordinates (TAIR10) chr1:+:6622312..6623271
Molecular Weight (calculated) 27609.70 Da
IEP (calculated) 9.92
GRAVY (calculated) -0.53
Length 253 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSMECSEF VGSRRFTGKK PSFSQTCSRL SQYLKENGSF GDLSLGMACK PDVNGTLGNS RQPTTTMSLF PCEASNMDSM VQDVKPTNLF PRQPSFSSSS
101: SSLPKEDVLK MTQTTRSVKP ESQTAPLTIF YAGQVIVFND FSAEKAKEVI NLASKGTANS LAKNQTDIRS NIATIANQVP HPRKTTTQEP IQSSPTPLTE
201: LPIARRASLH RFLEKRKDRV TSKAPYQLCD PAKASSNPQT TGNMSWLGLA AEI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)