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AT1G19150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:23851315 (2013): plastid
  • PMID:18431481 (2008): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : photosystem I light harvesting complex gene 6
Curator
Summary (TAIR10)
PSI type II chlorophyll a/b-binding protein (Lhca2*1) mRNA,
Computational
Description (TAIR10)
photosystem I light harvesting complex gene 6 (LHCA6); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 2 (TAIR:AT3G61470.1); Has 2345 Blast hits to 2241 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1989; Viruses - 0; Other Eukaryotes - 353 (source: NCBI BLink).
Protein Annotations
DNASU:838498eggNOG:ENOG410IFI4eggNOG:ENOG410YE22EMBL:AC069143EMBL:AY086461EMBL:BT002807EMBL:BT020322
EMBL:BT020554EMBL:CP002684EMBL:U03395EnsemblPlants:AT1G19150EnsemblPlants:AT1G19150.1entrez:838498Gene3D:1.10.3460.10
GeneID:838498GO:GO:0009507GO:GO:0009522GO:GO:0009535GO:GO:0009637GO:GO:0009768GO:GO:0009941
GO:GO:0010114GO:GO:0010218GO:GO:0010287GO:GO:0016021GO:GO:0016168GO:GO:0018298GO:GO:0031409
GO:GO:0046872Gramene:AT1G19150.1hmmpanther:PTHR21649hmmpanther:PTHR21649:SF5HOGENOM:HOG000238033InterPro:IPR001344InterPro:IPR022796
InterPro:IPR023329KEGG:ath:AT1G19150KO:K08908OMA:SVCEPLPPANTHER:PTHR21649PaxDb:Q8LCQ4Pfam:PF00504
PhylomeDB:Q8LCQ4PIR:H86324PIR:S46295ProteinModelPortal:Q8LCQ4Proteomes:UP000006548RefSeq:NP_173349.1SMR:Q8LCQ4
STRING:3702.AT1G19150.1SUPFAM:0043399SUPFAM:SSF103511TAIR:AT1G19150tair10-symbols:LHCA2*1tair10-symbols:LHCA6UniGene:At.359
UniProt:Q8LCQ4
Coordinates (TAIR10) chr1:+:6612806..6613799
Molecular Weight (calculated) 29940.90 Da
IEP (calculated) 6.24
GRAVY (calculated) -0.11
Length 270 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFAIASALT STLTLSTSRV QNPTQRRPHV ASTSSTGGRL MRERLVVVRA GKEVSSVCEP LPPDRPLWFP GSSPPEWLDG SLPGDFGFDP LGLGSDPDTL
101: KWFAQAELIH SRWAMLAVTG IIIPECLERL GFIENFSWYD AGSREYFADS TTLFVAQMVL MGWAEGRRWA DLIKPGSVDI EPKYPHKVNP KPDVGYPGGL
201: WFDFMMWGRG SPEPVMVLRT KEIKNGRLAM LAFLGFCFQA TYTSQDPIEN LMAHLADPGH CNVFSAFTSH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)