AT1G19090.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.932 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : receptor-like serine/threonine kinase 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
receptor-like serine/threonine kinase (RKF2) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
receptor-like serine/threonine kinase 2 (RKF2); FUNCTIONS IN: receptor signaling protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (TAIR:AT5G40380.1); Has 112374 Blast hits to 111073 proteins in 3970 species: Archae - 108; Bacteria - 13388; Metazoa - 41005; Fungi - 9087; Plants - 31953; Viruses - 460; Other Eukaryotes - 16373 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:6590350..6592615 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67653.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.16 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 600 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQICASIAQF LAWVSFLVLL ATVGSSSSSE SLLNCQPLDH HLVNPSRLLG FLRAMSSVND FITNDKLWVV SSITDVSPPI YVFLQCREDL SVSDCRHCFN 101: ESRLELERKC SGSGGRIHSD RCFLRFDDRD FSEEFVDPTF DKANCEETGT GFGEFWRFLD EALVNVTLKA VKNGGFGAAS VIKTEAVYAL AQCWQTLDEN 201: TCRECLVNAR SSLRACDGHE ARAFFTGCYL KYSTHKFFDD AAEHKPDADQ RNFIRSSFFP HLSDRDVTRL AIAAISLSIL TSLGAFISYR RVSRKRKAQV 301: PSCVNFKYEM LEKATESFHD SMKLGQGGAV KKLFFNTREW ADQFFNEVNL ISGVQHKNLV RLLGCSIEGP KSLLVYEYVH NRSLDQILFM KNTVHILSWK 401: QRFNIIIGIS EGLEYLHRGS EVKIIHRDIK TSNILLDRNL SPKIADFGLI RSMGTDKTQT NTGIAGTLGY LAPEYLIKGQ LTEKADVYAF GVLIIEIVTG 501: KKNNAFTQGT SSVLYSVWEH FKANTLDRSI DPRLKGSFVE EEALKVLQIG LLCVQSSVEL RPSMSEIVFM LQNKDSKFEY PKQPPFLSAS VLMPDEETRV |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)