suba logo
AT1G19040.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 6 (TAIR:AT1G03490.1); Has 740 Blast hits to 735 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 740; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:838486EMBL:BT029436EMBL:CP002684EnsemblPlants:AT1G19040
EnsemblPlants:AT1G19040.1entrez:838486GeneID:838486GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
Gramene:AT1G19040.1hmmpanther:PTHR31744IntAct:A0JQ66InterPro:IPR003441
KEGG:ath:AT1G19040Pfam:PF02365Pfscan:PS51005PROSITE:PS51005
Proteomes:UP000006548RefSeq:NP_173338.1SMR:A0JQ66SUPFAM:SSF101941
TAIR:AT1G19040UniGene:At.51675UniProt:A0JQ66
Coordinates (TAIR10) chr1:+:6576895..6577413
Molecular Weight (calculated) 20455.30 Da
IEP (calculated) 6.88
GRAVY (calculated) -0.55
Length 172 amino acids
Sequence (TAIR10)
(BLAST)
001: MSEVLTRGFR FRPADEEVTD YLMRKTQSPE FSCFIKTIDL YDKDPWVLGH VRDPCYNHYE WYYFVKKNPL GNEYLDKPRL NGFEHPRLKW DVLKQIHDAL
101: SSGQNVPPSV FTYGFRFHPT DQELLSLYLT PKAHSPDFSC FIRERESYMP WSHGFLNMLD LLFTRTVNGT TL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)