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AT1G18950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DDT domain superfamily
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DDT domain superfamily; CONTAINS InterPro DOMAIN/s: DDT domain (InterPro:IPR004022); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25580.1); Has 20293 Blast hits to 13585 proteins in 823 species: Archae - 41; Bacteria - 1919; Metazoa - 8043; Fungi - 2539; Plants - 1031; Viruses - 220; Other Eukaryotes - 6500 (source: NCBI BLink).
Protein Annotations
EMBL:AC068602EMBL:CP002684EnsemblPlants:AT1G18950EnsemblPlants:AT1G18950.1entrez:838476GeneID:838476GO:GO:0005634
GO:GO:0006351GO:GO:0006355Gramene:AT1G18950.1hmmpanther:PTHR14296InParanoid:F4IDY7InterPro:IPR018501InterPro:IPR028942
iPTMnet:F4IDY7KEGG:ath:AT1G18950ncoils:CoilOMA:PPKKEYKPfam:PF02791Pfam:PF15612PIR:D86323
PRIDE:F4IDY7ProteinModelPortal:F4IDY7Proteomes:UP000006548RefSeq:NP_173329.2TAIR:AT1G18950UniGene:At.41771UniProt:F4IDY7
Coordinates (TAIR10) chr1:+:6546539..6551549
Molecular Weight (calculated) 86254.30 Da
IEP (calculated) 4.65
GRAVY (calculated) -1.11
Length 750 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSSSDIVPD RSPADDVAPV TDTKIPKEEP LTLRRTRPSR ACTVRAQQRL QELQAAERKL KPPKKEYKRE QHRRREEVVE EDEDSEDDDQ EDEENDGDDE
101: SNPKQCVAGG SSTKIITSLV PPPEPSQMPR WNLRSMWELA SVLNFLHVFR PLLKINAEFS AEEFETALLT PNDTLSDIHI PLLKAIPPVT RMALTRDTWV
201: TVLCRKIRDC WHWVAEGDLP IVALQGREIE VYKNLDPAIR VVILKALCDI RVEQEDIRSY IDNSLKTGVH LSVFRKDRVG GDSHGVNFWY EEDPLIGHRL
301: YREIRKAEVL KVKTKGSKIL PNITYQWETV ATNFDEFQDV SEKLLQSSSR IEVSLGKKLV KDMLPEIEKE HKRKEKLLKK QHRQALLLDN FVVVDGLAGR
401: SLRDRKPVRY TFDDYDKSIN DAIKITKKKH PSPEHPLHRR ESARLDALAN GRSTSSTHPT EPVNDTASGR SSDFADYDDF DEHRDESLDR RRRQRPQRYS
501: ATDFVETVSD NEVEFQSDDD IYGEAVYDEE YLKKRKQKKL SSGSEGDEEK GDEEYKWDED NAEYEEEEEE EEEEDSLSAS EEDSDEPRRA KKMPRRETKL
601: RSRSNDFRPG LRRSKRATRI DYQQYEFSDS DKEATGLAKR KRFVEPDEPS DETGNGDFTM GSQDSEENAN DPETKSGEEE EPRDVNDNAD TTNGKENNQL
701: NKSNGTTDQE EVEGVVGKRR YLDLNELAPV SGFDDGPSTV LKDDDKTDNS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)