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AT1G18880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G62680.1); Has 4002 Blast hits to 3797 proteins in 617 species: Archae - 0; Bacteria - 698; Metazoa - 561; Fungi - 400; Plants - 2175; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).
Protein Annotations
BioGrid:23708eggNOG:COG3104eggNOG:KOG1237EMBL:AC011809EMBL:AY070054EMBL:AY117308EMBL:CP002684
EnsemblPlants:AT1G18880EnsemblPlants:AT1G18880.1entrez:838469GeneID:838469Genevisible:Q9M9V7GO:GO:0005886GO:GO:0010233
GO:GO:0015112GO:GO:0016021GO:GO:0090408Gramene:AT1G18880.1hmmpanther:PTHR11654hmmpanther:PTHR11654:SF59HOGENOM:HOG000237399
InParanoid:Q9M9V7InterPro:IPR000109InterPro:IPR020846KEGG:ath:AT1G18880OMA:FAMIACFPANTHER:PTHR11654PaxDb:Q9M9V7
Pfam:PF00854Pfam:Q9M9V7PhylomeDB:Q9M9V7PIR:G86322PRIDE:Q9M9V7PRO:PR:Q9M9V7ProteinModelPortal:Q9M9V7
Proteomes:UP000006548Reactome:R-ATH-427975RefSeq:NP_173322.1SMR:Q9M9V7STRING:3702.AT1G18880.1SUPFAM:SSF103473TAIR:AT1G18880
TMHMM:TMhelixUniGene:At.267UniGene:At.75252UniProt:Q9M9V7
Coordinates (TAIR10) chr1:+:6520800..6523241
Molecular Weight (calculated) 65178.10 Da
IEP (calculated) 9.20
GRAVY (calculated) 0.28
Length 587 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVEKTEKNI AEDDESKIIY RGWKVMPFII GNETFEKLGI VGSSSNLVIY LTTVFNMKSI TAAKVVNIYG GTSNFGTIVA AFLCDSYFGR YKTLSFAMIA
101: CFLGSVAMDL TAVIHPLHPA QCAKEIGSVC NGPSIGQIMF LAGAMVLLVI GAGGIRPCNL PFGADQFDPK TKEGKRGIES FFNWYFFTFT FAQMVSLTLI
201: VYVQSNVSWS IGLAIPAILM LLGCIIFFAG SKLYVKVKAS GSPIHSITRV IVVAIKKRRL KPVGPNELYN YIASDFKNSK LGHTEQFRFL DKSAIQTQDD
301: KLNKDGSPVD AWKLCSMQQV EEVKCVIRVL PVWLSAALFY LAYIQQTTYT IFQSLQSDRR LGPGSFQIPA GSYTVFLMLG MTIFIPIYDR VLVPFLRKYT
401: GRDGGITQLQ RVGAGLFLCI TSMMVSAIVE QYRRKVALTK PTLGLAPRKG AISSMSGMWL IPQLVLMGIA DALAGVGQME FYYKQFPENM RSFAGSLYYC
501: GIGLASYLST FLLSAVHDTT EGFSGGSWLP EDLNKGRLEY FYFLVAGMMT LNLAYFLLVS HWYRYKDVVA KDKDMDKTSA EFDKVSV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)