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AT1G18810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phytochrome kinase substrate-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
phytochrome kinase substrate-related; BEST Arabidopsis thaliana protein match is: phytochrome kinase substrate 1 (TAIR:AT2G02950.1); Has 458 Blast hits to 394 proteins in 45 species: Archae - 0; Bacteria - 2; Metazoa - 60; Fungi - 9; Plants - 109; Viruses - 2; Other Eukaryotes - 276 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J173eggNOG:ENOG410YZ9SEMBL:AC011809EMBL:AK118063
EMBL:CP002684EnsemblPlants:AT1G18810EnsemblPlants:AT1G18810.1entrez:838463
GeneID:838463Genevisible:Q8GXS8GO:GO:0009506GO:GO:0009585
Gramene:AT1G18810.1hmmpanther:PTHR33781hmmpanther:PTHR33781:SF3HOGENOM:HOG000153256
InParanoid:Q8GXS8KEGG:ath:AT1G18810OMA:DITKQHEPaxDb:Q8GXS8
Pfam:Q8GXS8PhylomeDB:Q8GXS8PIR:A86322PRIDE:Q8GXS8
PRO:PR:Q8GXS8Proteomes:UP000006548RefSeq:NP_564064.1STRING:3702.AT1G18810.1
TAIR:AT1G18810UniGene:At.41777UniProt:Q8GXS8
Coordinates (TAIR10) chr1:-:6485709..6486872
Molecular Weight (calculated) 43290.40 Da
IEP (calculated) 9.48
GRAVY (calculated) -0.90
Length 387 amino acids
Sequence (TAIR10)
(BLAST)
001: MDAEKKSAHF RQISSYKPQL LVLSSIQENP SSKISEKANI KADNDAEIGV FGAEKYFSMK LDHVDSTADI TKQHEKENTH DHPNANPNPN PNPHPHPHPQ
101: LTKTTSSRSK TSRHGTPSVR SESSCNSQTF LMRINNHNEN KQRKMNDTSI SFGGFRCYGP CSGVKTVHTD PKNSCKSRNS DRDFVAYDAR KHNDKPRLHF
201: EAKKADFHAQ EKISLPIQRS DIAMNLERKL SLLTWDAIPN QLSTKNNNHN NNGNNSSMSS NTQEEETASV ASSDLFEIEN ITSSVYEPSE ASIGWSVVTG
301: SMADQSVISD FDMMKRVTRN GPVVKTKPVI GEKVRSAGFL SGCKSHKAVS VVDSSRKVKE TAKVDHHEMS HQKKFKTEIR IQDLSFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)