suba logo
AT1G18680.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HNH endonuclease domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HNH endonuclease domain-containing protein; FUNCTIONS IN: endonuclease activity, nucleic acid binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: HNH nuclease (InterPro:IPR003615), HNH endonuclease (InterPro:IPR002711); BEST Arabidopsis thaliana protein match is: HNH endonuclease (TAIR:AT3G47490.1); Has 84 Blast hits to 84 proteins in 23 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ITNPeggNOG:ENOG410YTJ7EMBL:AC011809EMBL:AK118073EMBL:BT005697EMBL:CP002684EnsemblPlants:AT1G18680
EnsemblPlants:AT1G18680.1entrez:838449GeneID:838449GO:GO:0004519Gramene:AT1G18680.1hmmpanther:PTHR33427HOGENOM:HOG000005924
KEGG:ath:AT1G18680OMA:QTRVNRFPhylomeDB:Q9M9T9PIR:E86320Proteomes:UP000006548RefSeq:NP_173303.1SMR:Q9M9T9
TAIR:AT1G18680UniGene:At.41783UniProt:Q9M9T9
Coordinates (TAIR10) chr1:-:6432133..6433434
Molecular Weight (calculated) 20291.90 Da
IEP (calculated) 8.41
GRAVY (calculated) -0.57
Length 186 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSSFSASFT NSTTAAAVPP PSPPSSPSRS NVKSNGEERP RFFDGKAKNK CWANADIVPG RHPERWRKDV AGNIVCKRFG NCNGCLCFEY DHIVPYSKGG
101: ESIAENCQIL QTRVNRFKSA QENVDATTLK SYSCGLQFTD KELDVIEMAV YGDVLRPGKE CRCKTVAELL GQSKSKDGKA ACELPS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)