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AT1G18660.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.856
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : zinc finger (C3HC4-type RING finger) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ATP-dependent peptidase activity, binding, zinc ion binding; INVOLVED IN: proteolysis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Tetratricopeptide-like helical (InterPro:IPR011990), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain protein (TAIR:AT1G75460.1); Has 12320 Blast hits to 11867 proteins in 1696 species: Archae - 10; Bacteria - 754; Metazoa - 7268; Fungi - 935; Plants - 1517; Viruses - 81; Other Eukaryotes - 1755 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2802eggNOG:KOG4159EMBL:BT001981EMBL:BT006617EMBL:CP002684EnsemblPlants:AT1G18660EnsemblPlants:AT1G18660.1
EnsemblPlants:AT1G18660.2EnsemblPlants:AT1G18660.3entrez:838447ExpressionAtlas:Q8H0X2Gene3D:1.25.40.10Gene3D:3.30.40.10GeneID:838447
GO:GO:0004176GO:GO:0008270Gramene:AT1G18660.1Gramene:AT1G18660.2Gramene:AT1G18660.3hmmpanther:PTHR23327hmmpanther:PTHR23327:SF9
HOGENOM:HOG000071004IntAct:Q8H0X2InterPro:IPR001841InterPro:IPR003111InterPro:IPR011990InterPro:IPR013083InterPro:IPR015947
InterPro:IPR017907KEGG:ath:AT1G18660Pfam:PF02190Pfam:PF13414Pfam:PF13920Pfscan:PS50089PhylomeDB:Q8H0X2
PROSITE:PS00518PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_564060.1RefSeq:NP_849687.1RefSeq:NP_849688.1scanprosite:PS00518
SMART:SM00184SMART:SM00464SMR:Q8H0X2STRING:3702.AT1G18660.4SUPFAM:SSF48452SUPFAM:SSF57850SUPFAM:SSF88697
TAIR:AT1G18660UniGene:At.20365UniGene:At.67116UniProt:Q8H0X2
Coordinates (TAIR10) chr1:+:6421433..6425565
Molecular Weight (calculated) 55410.70 Da
IEP (calculated) 5.79
GRAVY (calculated) -0.37
Length 486 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNEDSLPPF TLFGLDDVEN YGLVTEADNS LPLDIHNQVF QLVEKGNQSF KESRFEEAIS SYSKANSIKP LDPIVLGNRS AAYIRFGQYL KQRSASISEY
101: KPLNGFDMSM LGELALKDAD KLMSLQSSLV KSYITKACAL MLLERYEVAR DTILSGLQID PFSGPLRSNL QELEKVMPNS MRKTHGMAER SDDFDCTVCL
201: KLLYEPATTP CGHTFCRSCL FQSMDRGNKC PLCRTVIFMT PRTCAVSVTL NNIIEKNFPE EYAERKSEQD TLVHLGNESM PLFVMDVIIP CQKLSLHIFE
301: PRYRLMVRRI MEGNHRMGMV ALDSATGSPV DVACEVEITE CDPLPDGRFV LELESHRRCR IVKAWDQDGY RVAEVEWVKD IPPQSEQGKA DLRELTTSAA
401: SFARSWLDRA KEAARQGDRR RLEILLNVES MIPTPQDPER FSFWLATLTD RRPSERLELL RLQDTGERIK RGLIYLRSVE RGCRMQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)