suba logo
AT1G18650.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plasmodesmata callose-binding protein 3
Curator
Summary (TAIR10)
Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and is predicted to bind callose.
Computational
Description (TAIR10)
plasmodesmata callose-binding protein 3 (PDCB3); CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: glucan endo-1,3-beta-glucosidase-like protein 3 (TAIR:AT5G08000.1); Has 1473 Blast hits to 1425 proteins in 72 species: Archae - 4; Bacteria - 6; Metazoa - 5; Fungi - 46; Plants - 1391; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Protein Annotations
CAZy:CBM43eggNOG:ENOG410IZJ3eggNOG:ENOG410YNCGEMBL:AC026238EMBL:AK228238EMBL:AY087143EMBL:BT006195
EMBL:CP002684EnsemblPlants:AT1G18650EnsemblPlants:AT1G18650.1entrez:838446GeneID:838446Genevisible:Q9FZ86GO:GO:0001872
GO:GO:0005886GO:GO:0009506GO:GO:0030247GO:GO:0031225Gramene:AT1G18650.1hmmpanther:PTHR32227hmmpanther:PTHR32227:SF75
HOGENOM:HOG000238097InParanoid:Q9FZ86InterPro:IPR012946KEGG:ath:AT1G18650OMA:KSHCSYAPaxDb:Q9FZ86Pfam:PF07983
Pfam:Q9FZ86PhylomeDB:Q9FZ86PIR:C86320PRIDE:Q9FZ86PRO:PR:Q9FZ86ProteinModelPortal:Q9FZ86Proteomes:UP000006548
RefSeq:NP_564059.1SMART:SM00768SMR:Q9FZ86STRING:3702.AT1G18650.1TAIR:AT1G18650tair10-symbols:PDCB3TCDB:1.I.2.1.1
TMHMM:TMhelixUniGene:At.23212UniProt:Q9FZ86
Coordinates (TAIR10) chr1:-:6419036..6420413
Molecular Weight (calculated) 19337.00 Da
IEP (calculated) 7.68
GRAVY (calculated) 0.13
Length 184 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVFVLVMIL LAMAGHSSGT WCVCKEGLSE AMLQKTLDYA CGAGADCGPI HQTGPCFNPN TVKSHCSYAV NSFFQKKGQS LGTCDFAGTA TFSASDPSYT
101: TCPFPASASG SGTTTPVTTT PSTRVPTTTN TRPYTITPST GGGLGIPSGI NPDYTDPSFG FKLQSPRFGF IVLFTLFLPF YLFS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)