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AT1G18570.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb domain protein 51
Curator
Summary (TAIR10)
Encodes a member of the R2R3-MYB transcription family. Involved in indole glucosinolate biosynthesis.
Computational
Description (TAIR10)
myb domain protein 51 (MYB51); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 122 (TAIR:AT1G74080.1); Has 9055 Blast hits to 8387 proteins in 480 species: Archae - 0; Bacteria - 2; Metazoa - 725; Fungi - 509; Plants - 5977; Viruses - 4; Other Eukaryotes - 1838 (source: NCBI BLink).
Protein Annotations
BioGrid:23677eggNOG:COG5147eggNOG:KOG0048EMBL:AC026238EMBL:AF062887EMBL:AK117331EMBL:AY519555
EMBL:BT006244EMBL:CP002684EnsemblPlants:AT1G18570EnsemblPlants:AT1G18570.1entrez:838438Gene3D:1.10.10.60GeneID:838438
Genevisible:O49782GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009617GO:GO:0009625
GO:GO:0009651GO:GO:0009682GO:GO:0009723GO:GO:0009733GO:GO:0009737GO:GO:0009739GO:GO:0009751
GO:GO:0009753GO:GO:0009759GO:GO:0042742GO:GO:0052544Gramene:AT1G18570.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF586
HOGENOM:HOG000237600InParanoid:O49782InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT1G18570KO:K09422
OMA:NDEDFMMPaxDb:O49782Pfam:O49782Pfam:PF00249Pfscan:PS51294PhylomeDB:O49782PIR:T51659
PRIDE:O49782PRO:PR:O49782PROSITE:PS51294ProteinModelPortal:O49782Proteomes:UP000006548RefSeq:NP_173292.1SMART:SM00717
SMR:O49782STRING:3702.AT1G18570.1SUPFAM:SSF46689TAIR:AT1G18570tair10-symbols:AtMYB51tair10-symbols:BW51Atair10-symbols:BW51B
tair10-symbols:HIG1tair10-symbols:MYB51UniGene:At.10908UniProt:O49782
Coordinates (TAIR10) chr1:+:6389765..6391026
Molecular Weight (calculated) 39156.50 Da
IEP (calculated) 5.65
GRAVY (calculated) -0.66
Length 352 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRTPCCKAE LGLKKGAWTP EEDQKLLSYL NRHGEGGWRT LPEKAGLKRC GKSCRLRWAN YLRPDIKRGE FTEDEERSII SLHALHGNKW SAIARGLPGR
101: TDNEIKNYWN THIKKRLIKK GIDPVTHKGI TSGTDKSENL PEKQNVNLTT SDHDLDNDKA KKNNKNFGLS SASFLNKVAN RFGKRINQSV LSEIIGSGGP
201: LASTSHTTNT TTTSVSVDSE SVKSTSSSFA PTSNLLCHGT VATTPVSSNF DVDGNVNLTC SSSTFSDSSV NNPLMYCDNF VGNNNVDDED TIGFSTFLND
301: EDFMMLEESC VENTAFMKEL TRFLHEDEND VVDVTPVYER QDLFDEIDNY FG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)