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AT1G18485.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 47794 Blast hits to 13382 proteins in 245 species: Archae - 0; Bacteria - 5; Metazoa - 44; Fungi - 66; Plants - 47218; Viruses - 0; Other Eukaryotes - 461 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC013354EMBL:AK229592
EMBL:CP002684EnsemblPlants:AT1G18485EnsemblPlants:AT1G18485.1entrez:838429
Gene3D:1.25.40.10GeneID:838429Genevisible:Q0WN60GO:GO:0008270
Gramene:AT1G18485.1HOGENOM:HOG000237570InParanoid:Q0WN60InterPro:IPR002885
InterPro:IPR011990InterPro:IPR032867iPTMnet:Q0WN60KEGG:ath:AT1G18485
OMA:TRIITMYPaxDb:Q0WN60Pfam:PF01535Pfam:PF13041
Pfam:PF13812Pfam:PF14432Pfam:Q0WN60Pfscan:PS51375
PhylomeDB:Q0WN60PIR:E86318PRIDE:Q0WN60PRO:PR:Q0WN60
PROSITE:PS51375ProteinModelPortal:Q0WN60Proteomes:UP000006548RefSeq:NP_564054.1
SMR:Q0WN60STRING:3702.AT1G18485.1SUPFAM:SSF48452TAIR:AT1G18485
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.28671UniProt:Q0WN60
Coordinates (TAIR10) chr1:+:6363172..6366084
Molecular Weight (calculated) 108816.00 Da
IEP (calculated) 6.65
GRAVY (calculated) -0.05
Length 970 amino acids
Sequence (TAIR10)
(BLAST)
001: MASVLLPLPQ VFVLFDYRRS RKESSFPRAV YNSNSISSNS TNANHFLRRI SNFCETGDLD KSFRTVQEFV GDDESSSDAF LLVREALGLL LQASGKRKDI
101: EMGRKIHQLV SGSTRLRNDD VLCTRIITMY AMCGSPDDSR FVFDALRSKN LFQWNAVISS YSRNELYDEV LETFIEMIST TDLLPDHFTY PCVIKACAGM
201: SDVGIGLAVH GLVVKTGLVE DVFVGNALVS FYGTHGFVTD ALQLFDIMPE RNLVSWNSMI RVFSDNGFSE ESFLLLGEMM EENGDGAFMP DVATLVTVLP
301: VCAREREIGL GKGVHGWAVK LRLDKELVLN NALMDMYSKC GCITNAQMIF KMNNNKNVVS WNTMVGGFSA EGDTHGTFDV LRQMLAGGED VKADEVTILN
401: AVPVCFHESF LPSLKELHCY SLKQEFVYNE LVANAFVASY AKCGSLSYAQ RVFHGIRSKT VNSWNALIGG HAQSNDPRLS LDAHLQMKIS GLLPDSFTVC
501: SLLSACSKLK SLRLGKEVHG FIIRNWLERD LFVYLSVLSL YIHCGELCTV QALFDAMEDK SLVSWNTVIT GYLQNGFPDR ALGVFRQMVL YGIQLCGISM
601: MPVFGACSLL PSLRLGREAH AYALKHLLED DAFIACSLID MYAKNGSITQ SSKVFNGLKE KSTASWNAMI MGYGIHGLAK EAIKLFEEMQ RTGHNPDDLT
701: FLGVLTACNH SGLIHEGLRY LDQMKSSFGL KPNLKHYACV IDMLGRAGQL DKALRVVAEE MSEEADVGIW KSLLSSCRIH QNLEMGEKVA AKLFELEPEK
801: PENYVLLSNL YAGLGKWEDV RKVRQRMNEM SLRKDAGCSW IELNRKVFSF VVGERFLDGF EEIKSLWSIL EMKISKMGYR PDTMSVQHDL SEEEKIEQLR
901: GHSEKLALTY GLIKTSEGTT IRVYKNLRIC VDCHNAAKLI SKVMEREIVV RDNKRFHHFK NGVCSCGDYW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)